Bullet Blender Publications: Animal Tissue By Type - Next Advance

Adipose

Albury-Warren, T. M., Pandey, V., Spinel, L. P., Masternak, M., & Altomare, D. A. (2015). Prediabetes linked to excess glucagon in transgenic mice with pancreatic active AKT1. Journal of Endocrinology, JOE-15-0288. https://doi.org/10.1530/JOE-15-0288

Neve, E. P. A., Köfeler, H., Hendriks, D. F. G., Nordling, Å., Gogvadze, V., Mkrtchian, S., Näslund, E., & Ingelman-Sundberg, M. (2015). Expression and Function of mARC: Roles in Lipogenesis and Metabolic Activation of Ximelagatran. PLOS ONE, 10(9), e0138487. https://doi.org/10.1371/journal.pone.0138487

Keung, E. Z., Akdemir, K. C., Al Sannaa, G. A., Garnett, J., Lev, D., Torres, K. E., Lazar, A. J., Rai, K., & Chin, L. (2015). Increased H3K9me3 drives dedifferentiated phenotype via KLF6 repression in liposarcoma. Journal of Clinical Investigation, 125(8), 2965–2978. https://doi.org/10.1172/JCI77976

Dordevic, A., Pendergast, F., Morgan, H., Villas-Boas, S., Caldow, M., Larsen, A., Sinclair, A., & Cameron-Smith, D. (2015). Postprandial Responses to Lipid and Carbohydrate Ingestion in Repeated Subcutaneous Adipose Tissue Biopsies in Healthy Adults. Nutrients, 7(7), 5347–5361. https://doi.org/10.3390/nu7075224

White, P. J., Mitchell, P. L., Schwab, M., Trottier, J., Kang, J. X., Barbier, O., & Marette, A. (2015). Transgenic ω-3 PUFA enrichment alters morphology and gene expression profile in adipose tissue of obese mice: Potential role for protectins. Metabolism, 64(6), 666–676. https://doi.org/10.1016/j.metabol.2015.01.017

Fukunaga, T., Zou, W., Rohatgi, N., Colca, J. R., & Teitelbaum, S. L. (2015). An Insulin-Sensitizing Thiazolidinedione, Which Minimally Activates PPARγ, Does Not Cause Bone Loss: EFFECT OF AN INSULIN-SENSITIZING TZD ON BONE LOSS. Journal of Bone and Mineral Research, 30(3), 481–488. https://doi.org/10.1002/jbmr.2364

Liu, L., Zou, P., Zheng, L., Linarelli, L. E., Amarell, S., Passaro, A., Liu, D., & Cheng, Z. (2015). Tamoxifen reduces fat mass by boosting reactive oxygen species. Cell Death and Disease, 6(1), e1586. https://doi.org/10.1038/cddis.2014.553

Do, A., Menon, V., Zhi, X., Gesing, A., Wiesenborn, D., Spong, A., Sun, L., Bartke, A., & Masternak, M. M. (2015). Thyroxine modifies the effects of growth hormone in Ames dwarf mice. Aging (Albany, NY), 7(4), 241–255. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4429089/

Kahraman, S., Dirice, E., De Jesus, D. F., Hu, J., & Kulkarni, R. N. (2014). Maternal insulin resistance and transient hyperglycemia impact the metabolic and endocrine phenotypes of offspring. AJP: Endocrinology and Metabolism, 307(10), E906–E918. https://doi.org/10.1152/ajpendo.00210.2014

Sutton, A. K., Pei, H., Burnett, K. H., Myers, M. G., Rhodes, C. J., & Olson, D. P. (2014). Control of Food Intake and Energy Expenditure by Nos1 Neurons of the Paraventricular Hypothalamus. Journal of Neuroscience, 34(46), 15306–15318. https://doi.org/10.1523/JNEUROSCI.0226-14.2014

Menon, V., Zhi, X., Hossain, T., Bartke, A., Spong, A., Gesing, A., & Masternak, M. M. (2014). The contribution of visceral fat to improved insulin signaling in Ames dwarf mice. Aging Cell, 13(3), 497–506. https://doi.org/10.1111/acel.12201

Goetzman, E. S., Alcorn, J. F., Bharathi, S. S., Uppala, R., McHugh, K. J., Kosmider, B., Chen, R., Zuo, Y. Y., Beck, M. E., McKinney, R. W., Skilling, H., Suhrie, K. R., Karunanidhi, A., Yeasted, R., Otsubo, C., Ellis, B., Tyurina, Y. Y., Kagan, V. E., Mallampalli, R. K., & Vockley, J. (2014). Long-chain Acyl-CoA Dehydrogenase Deficiency as a Cause of Pulmonary Surfactant Dysfunction. Journal of Biological Chemistry, 289(15), 10668–10679. https://doi.org/10.1074/jbc.M113.540260

Hindle, A. G., & Martin, S. L. (2014). Intrinsic circannual regulation of brown adipose tissue form and function in tune with hibernation. AJP: Endocrinology and Metabolism, 306(3), E284–E299. https://doi.org/10.1152/ajpendo.00431.2013

Melero, M., García-Párraga, D., Corpa, J., Ortega, J., Rubio-Guerri, C., Crespo, J., Rivera-Arroyo, B., & Sánchez-Vizcaíno, J. (2014). First molecular detection and characterization of herpesvirus and poxvirus in a Pacific walrus (Odobenus rosmarus divergens). BMC Veterinary Research, 10(1), 968. https://doi.org/10.1186/s12917-014-0308-2

Vaughan, C. H., Zarebidaki, E., Ehlen, J. C., & Bartness, T. J. (2014). Analysis and Measurement of the Sympathetic and Sensory Innervation of White and Brown Adipose Tissue. In Methods in Enzymology (Vol. 537, pp. 199–225). Elsevier. http://linkinghub.elsevier.com/retrieve/pii/B9780124116191000112

Bajpai, G., Simmen, R. C. M., & Stenken, J. A. (2014). In vivo microdialysis sampling of adipokines CCL2, IL-6, and leptin in the mammary fat pad of adult female rats. Mol. BioSyst., 10(4), 806–812. https://doi.org/10.1039/C3MB70308H

Cheng, X., Guo, S., Liu, Y., Chu, H., Hakimi, P., Berger, N. A., Hanson, R. W., & Kao, H.-Y. (2013). Ablation of Promyelocytic Leukemia Protein (PML) Re-patterns Energy Balance and Protects Mice from Obesity Induced by a Western Diet. Journal of Biological Chemistry, 288(41), 29746–29759. https://doi.org/10.1074/jbc.M113.487595

Dekker, M. J., Baker, C., Naples, M., Samsoondar, J., Zhang, R., Qiu, W., Sacco, J., & Adeli, K. (2013). Inhibition of sphingolipid synthesis improves dyslipidemia in the diet-induced hamster model of insulin resistance: Evidence for the role of sphingosine and sphinganine in hepatic VLDL-apoB100 overproduction. Atherosclerosis, 228(1), 98–109. https://doi.org/10.1016/j.atherosclerosis.2013.01.041

Lee, T.-W. A., Kwon, H., Zong, H., Yamada, E., Vatish, M., Pessin, J. E., & Bastie, C. C. (2013). Fyn Deficiency Promotes a Preferential Increase in Subcutaneous Adipose Tissue Mass and Decreased Visceral Adipose Tissue Inflammation. Diabetes, 62(5), 1537–1546. https://doi.org/10.2337/db12-0920

Liu, B.-H., Lin, Y.-Y., Wang, Y.-C., Huang, C.-W., Chen, C.-C., Wu, S.-C., Mersmann, H. J., Cheng, W. T. K., & Ding, S.-T. (2013). Porcine Adiponectin Receptor 1 Transgene Resists High-fat/Sucrose Diet-Induced Weight Gain, Hepatosteatosis and Insulin Resistance in Mice. Experimental Animals, 62(4), 347–360. https://doi.org/10.1538/expanim.62.347

Chaker, B., Samra, T. A., Datta, N. S., & Abou-Samra, A. B. (2013). Altered Responses to Cold Environment in Urocortin 1 and Corticotropin-Releasing Factor Deficient Mice. Physiology Journal, 2013, 1–7. https://doi.org/10.1155/2013/185767

Kumar, M., Roe, K., Nerurkar, P. V., Namekar, M., Orillo, B., Verma, S., & Nerurkar, V. R. (2012). Impaired Virus Clearance, Compromised Immune Response and Increased Mortality in Type 2 Diabetic Mice Infected with West Nile Virus. PLoS ONE, 7(8), e44682. https://doi.org/10.1371/journal.pone.0044682

Bastie, C. C., Gaffney-Stomberg, E., Lee, T.-W. A., Dhima, E., Pessin, J. E., & Augenlicht, L. H. (2012). Dietary Cholecalciferol and Calcium Levels in a Western-Style Defined Rodent Diet Alter Energy Metabolism and Inflammatory Responses in Mice. Journal of Nutrition, 142(5), 859–865. https://doi.org/10.3945/jn.111.149914

Carlstrom, M., Larsen, F. J., Nystrom, T., Hezel, M., Borniquel, S., Weitzberg, E., & Lundberg, J. O. (2010). Dietary inorganic nitrate reverses features of metabolic syndrome in endothelial nitric oxide synthase-deficient mice. Proceedings of the National Academy of Sciences, 107(41), 17716–17720. https://doi.org/10.1073/pnas.1008872107

Blood vessels

Zhou, L., Zheng, Y., Li, Z., Bao, L., Dou, Y., Tang, Y., Zhang, J., Zhou, J., Liu, Y., Jia, Y., & Li, X. (2016). Compound K Attenuates the Development of Atherosclerosis in ApoE−/− Mice via LXRα Activation. International Journal of Molecular Sciences, 17(7), 1054. https://doi.org/10.3390/ijms17071054

Adamo, R. F., Fishbein, I., Zhang, K., Wen, J., Levy, R. J., Alferiev, I. S., & Chorny, M. (2016). Magnetically enhanced cell delivery for accelerating recovery of the endothelium in injured arteries. Journal of Controlled Release, 222, 169–175. https://doi.org/10.1016/j.jconrel.2015.12.025

Papke, C. L., Tsunezumi, J., Ringuette, L.-J., Nagaoka, H., Terajima, M., Yamashiro, Y., Urquhart, G., Yamauchi, M., Davis, E. C., & Yanagisawa, H. (2015). Loss of fibulin-4 disrupts collagen synthesis and maturation: implications for pathology resulting from EFEMP2 mutations. Human Molecular Genetics, 24(20), 5867–5879. https://doi.org/10.1093/hmg/ddv308

Carlström, M., Liu, M., Yang, T., Zollbrecht, C., Huang, L., Peleli, M., Borniquel, S., Kishikawa, H., Hezel, M., Persson, A. E. G., Weitzberg, E., & Lundberg, J. O. (2015). Cross-talk Between Nitrate-Nitrite-NO and NO Synthase Pathways in Control of Vascular NO Homeostasis. Antioxidants & Redox Signaling, 23(4), 295–306. https://doi.org/10.1089/ars.2013.5481

Liu, M., Zollbrecht, C., Peleli, M., Lundberg, J. O., Weitzberg, E., & Carlström, M. (2015). Nitrite-mediated renal vasodilatation is increased during ischemic conditions via cGMP-independent signaling. Free Radical Biology and Medicine, 84, 154–160. https://doi.org/10.1016/j.freeradbiomed.2015.03.025

Reho, J. J., Zheng, X., Asico, L. D., & Fisher, S. A. (2015). Redox signaling and splicing dependent change in myosin phosphatase underlie early versus late changes in NO vasodilator reserve in a mouse LPS model of sepsis. American Journal of Physiology – Heart and Circulatory Physiology, 308(9), H1039–H1050. https://doi.org/10.1152/ajpheart.00912.2014

Zheng, X., Reho, J. J., Wirth, B., & Fisher, S. A. (2015). TRA2β controls Mypt1 exon 24 splicing in the developmental maturation of mouse mesenteric artery smooth muscle. American Journal of Physiology – Cell Physiology, 308(4), C289–C296. https://doi.org/10.1152/ajpcell.00304.2014

Rotllan, N., Chamorro-Jorganes, A., Araldi, E., Wanschel, A. C., Aryal, B., Aranda, J. F., Goedeke, L., Salerno, A. G., Ramirez, C. M., Sessa, W. C., Suarez, Y., & Fernandez-Hernando, C. (2015). Hematopoietic Akt2 deficiency attenuates the progression of atherosclerosis. The FASEB Journal, 29(2), 597–610. https://doi.org/10.1096/fj.14-262097

Hao, P., Ren, Y., Pasterkamp, G., Moll, F. L., de Kleijn, D. P. V., & Sze, S. K. (2014). Deep proteomic profiling of human carotid atherosclerotic plaques using multidimensional LC-MS/MS. PROTEOMICS – Clinical Applications, 8(7–8), 631–635. https://doi.org/10.1002/prca.201400007

Chorny, M., Fishbein, I., Tengood, J. E., Adamo, R. F., Alferiev, I. S., & Levy, R. J. (2013). Site-specific gene delivery to stented arteries using magnetically guided zinc oleate-based nanoparticles loaded with adenoviral vectors. The FASEB Journal, 27(6), 2198–2206. https://doi.org/10.1096/fj.12-224659

Gao, N., Huang, J., He, W., Zhu, M., Kamm, K. E., & Stull, J. T. (2013). Signaling through Myosin Light Chain Kinase in Smooth Muscles. Journal of Biological Chemistry, 288(11), 7596–7605. https://doi.org/10.1074/jbc.M112.427112

Fox, K. A., Longo, M., Tamayo, E., Gamble, P., Makhlouf, M., Mateus, J. F., & Saade, G. R. (2012). Sex-specific effects of nicotine exposure on developmental programming of blood pressure and vascular reactivity in the C57Bl/6J mouse. American Journal of Obstetrics and Gynecology, 207(3), 208.e1-208.e9. https://doi.org/10.1016/j.ajog.2012.06.021

Kuang, S.-Q., Kwartler, C. S., Byanova, K. L., Pham, J., Gong, L., Prakash, S. K., Huang, J., Kamm, K. E., Stull, J. T., Sweeney, H. L., & Milewicz, D. M. (2012). Rare, Nonsynonymous Variant in the Smooth Muscle-Specific Isoform of Myosin Heavy Chain, MYH11, R247C, Alters Force Generation in the Aorta and Phenotype of Smooth Muscle Cells. Circulation Research, 110(11), 1411–1422. https://doi.org/10.1161/CIRCRESAHA.111.261743

Kassan, M., Galan, M., Partyka, M., Trebak, M., & Matrougui, K. (2011). Interleukin-10 Released by CD4+CD25+ Natural Regulatory T Cells Improves Microvascular Endothelial Function Through Inhibition of NADPH Oxidase Activity in Hypertensive Mice. Arteriosclerosis, Thrombosis, and Vascular Biology, 31(11), 2534–2542. https://doi.org/10.1161/ATVBAHA.111.233262

Fox, K. A., Longo, M., Tamayo, E., Kechichian, T., Bytautiene, E., Hankins, G. D. V., Saade, G. R., & Costantine, M. M. (2011). Effects of pravastatin on mediators of vascular function in a mouse model of soluble Fms-like tyrosine kinase-1–induced preeclampsia. American Journal of Obstetrics and Gynecology, 205(4), 366.e1-366.e5. https://doi.org/10.1016/j.ajog.2011.06.083

Shai, S.-Y., Sukhanov, S., Higashi, Y., Vaughn, C., Rosen, C. J., & Delafontaine, P. (2011). Low circulating insulin-like growth factor I increases atherosclerosis in ApoE-deficient mice. AJP: Heart and Circulatory Physiology, 300(5), H1898–H1906. https://doi.org/10.1152/ajpheart.01081.2010

Rayner, K. J., Suarez, Y., Davalos, A., Parathath, S., Fitzgerald, M. L., Tamehiro, N., Fisher, E. A., Moore, K. J., & Fernandez-Hernando, C. (2010). MiR-33 Contributes to the Regulation of Cholesterol Homeostasis. Science, 328(5985), 1570–1573. https://doi.org/10.1126/science.1189862

Lee, Y. W., Lee, W. H., & Kim, P. H. (2010). Oxidative mechanisms of IL-4-induced IL-6 expression in vascular endothelium. Cytokine, 49(1), 73–79. https://doi.org/10.1016/j.cyto.2009.08.009

Lee, Y. W., Lee, W. H., & Kim, P. H. (2010). Role of NADPH oxidase in interleukin-4-induced monocyte chemoattractant protein-1 expression in vascular endothelium. Inflammation Research, 59(9), 755–765. https://doi.org/10.1007/s00011-010-0187-3

Bone, cartilage and skin

Macedo, G. C., Kreifeldt, M., Goulding, S. P., Okhuarobo, A., Sidhu, H., & Contet, C. (2023). Chronic MAP4343 reverses escalated alcohol drinking in a mouse model of alcohol use disorder. Neuropsychopharmacology. https://doi.org/10.1038/s41386-023-01529-z

Cupples Connon, C. (Ed.). (2023). Forensic DNA Analysis: Methods and Protocols (1st ed. 2023). Springer US. https://doi.org/10.1007/978-1-0716-3295-6

Pang, S., Su, F. Y., Green, A., Salim, J., McKittrick, J., & Jasiuk, I. (2021). Comparison of different protocols for demineralization of cortical bone. Scientific Reports, 11(1), 7012. https://doi.org/10.1038/s41598-021-86257-4

Wen, L., Gao, Q., Ma, C., Ge, Y., You, L., Liu, R. H., Fu, X., & Liu, D. (2016). Effect of polysaccharides from Tremella fuciformis on UV-induced photoaging. Journal of Functional Foods, 20, 400–410. https://doi.org/10.1016/j.jff.2015.11.014

Doldur-Balli, F., Ozel, M. N., Gulsuner, S., Tekinay, A. B., Ozcelik, T., Konu, O., & Adams, M. M. (2015). Characterization of a novel zebrafish (Danio rerio) gene, wdr81, associated with cerebellar ataxia, mental retardation and dysequilibrium syndrome (CAMRQ). BMC Neuroscience, 16(1). https://doi.org/10.1186/s12868-015-0229-4

Li, J.-Y., D’Amelio, P., Robinson, J., Walker, L. D., Vaccaro, C., Luo, T., Tyagi, A. M., Yu, M., Reott, M., Sassi, F., Buondonno, I., Adams, J., Weitzmann, M. N., Isaia, G. C., & Pacifici, R. (2015). IL-17A Is Increased in Humans with Primary Hyperparathyroidism and Mediates PTH-Induced Bone Loss in Mice. Cell Metabolism, 22(5), 799–810. https://doi.org/10.1016/j.cmet.2015.09.012

Kim, C.-H., Cheong, K. A., Lim, W. S., Park, H.-M., & Lee, A.-Y. (2015). Effects of low-dose light-emitting-diode therapy in combination with water bath for atopic dermatitis in NC/Nga mice. Photodermatology, Photoimmunology & Photomedicine, n/a-n/a. https://doi.org/10.1111/phpp.12220

Falendysz, E. A., Lopera, J. G., Lorenzsonn, F., Salzer, J. S., Hutson, C. L., Doty, J., Gallardo-Romero, N., Carroll, D. S., Osorio, J. E., & Rocke, T. E. (2015). Further Assessment of Monkeypox Virus Infection in Gambian Pouched Rats (Cricetomys gambianus) Using In Vivo Bioluminescent Imaging. PLOS Neglected Tropical Diseases, 9(10), e0004130. https://doi.org/10.1371/journal.pntd.0004130

Kuo, Y.-H., Chen, C.-W., Chu, Y., Lin, P., & Chiang, H.-M. (2015). In Vitro and In Vivo Studies on Protective Action of N-Phenethyl Caffeamide against Photodamage of Skin. PLOS ONE, 10(9), e0136777. https://doi.org/10.1371/journal.pone.0136777

Jo, S., Ryu, J., Kim, H., Kim, M., Ryu, M. H., Kim, H., & Cho, S.-I. (2015). Anti-inflammatory effects of Sanguisorbae Radix on contact dermatitis induced by dinitrofluorobenzene in mice. Chinese Journal of Integrative Medicine. https://doi.org/10.1007/s11655-015-2148-8

Sebastian, R., Chau, E., Fillmore, P., Matthews, J., Price, L. A., Sidhaye, V., & Milner, S. M. (2015). Epidermal aquaporin-3 is increased in the cutaneous burn wound. Burns, 41(4), 843–847. https://doi.org/10.1016/j.burns.2014.10.033

Kim, C.-H., Kim, J.-Y., & Lee, A.-Y. (2015). Therapeutic and immunomodulatory effects of glucosamine in combination with low-dose cyclosporine A in a murine model of imiquimod-induced psoriasis. European Journal of Pharmacology, 756, 43–51. https://doi.org/10.1016/j.ejphar.2015.03.010

Danan-Gotthold, M., Golan-Gerstl, R., Eisenberg, E., Meir, K., Karni, R., & Levanon, E. Y. (2015). Identification of recurrent regulated alternative splicing events across human solid tumors. Nucleic Acids Research, 43(10), 5130–5144. https://doi.org/10.1093/nar/gkv210

van Houdt, C. I. A., Tim, C. R., Crovace, M. C., Zanotto, E. D., Peitl, O., Ulrich, D. J. O., Jansen, J. A., Parizotto, N. A., Renno, A. C., & van den Beucken, J. J. J. P. (2015). Bone regeneration and gene expression in bone defects under healthy and osteoporotic bone conditions using two commercially available bone graft substitutes. Biomedical Materials, 10(3), 035003. https://doi.org/10.1088/1748-6041/10/3/035003

Dao, V., Pandeswara, S., Liu, Y., Hurez, V., Dodds, S., Callaway, D., Liu, A., Hasty, P., Sharp, Z. D., & Curiel, T. J. (2015). Prevention of Carcinogen and Inflammation-Induced Dermal Cancer by Oral Rapamycin Includes Reducing Genetic Damage. Cancer Prevention Research, 8(5), 400–409. https://doi.org/10.1158/1940-6207.CAPR-14-0313-T

Heim, C. E., Vidlak, D., Scherr, T. D., Hartman, C. W., Garvin, K. L., & Kielian, T. (2015). IL-12 Promotes Myeloid-Derived Suppressor Cell Recruitment and Bacterial Persistence during Staphylococcus aureus Orthopedic Implant Infection. The Journal of Immunology, 194(8), 3861–3872. https://doi.org/10.4049/jimmunol.1402689

Lee, H., Jo, S., Ryu, J., Jeong, H., Lee, G., Ryu, M., Jung, M., Kim, H., & Kim, B. (2015). Effects of Schisandra chinensis Turcz. fruit on contact dermatitis induced by dinitrofluorobenzene in mice. Molecular Medicine Reports. https://doi.org/10.3892/mmr.2015.3618

Hao, L., Chen, W., McConnell, M., Zhu, Z., Li, S., Reddy, M., Eleazer, P. D., Wang, M., & Li, Y.-P. (2015). A Small Molecule, Odanacatib, Inhibits Inflammation and Bone Loss Caused by Endodontic Disease. Infection and Immunity, 83(4), 1235–1245. https://doi.org/10.1128/IAI.01713-14

Lowery, J. W., Intini, G., Gamer, L., Lotinun, S., Salazar, V. S., Ote, S., Cox, K., Baron, R., & Rosen, V. (2015). Loss of BMPR2 leads to high bone mass due to increased osteoblast activity. Journal of Cell Science, 128(7), 1308–1315. https://doi.org/10.1242/jcs.156737

Mitchell, D. A., Batich, K. A., Gunn, M. D., Huang, M.-N., Sanchez-Perez, L., Nair, S. K., Congdon, K. L., Reap, E. A., Archer, G. E., Desjardins, A., Friedman, A. H., Friedman, H. S., Herndon II, J. E., Coan, A., McLendon, R. E., Reardon, D. A., Vredenburgh, J. J., Bigner, D. D., & Sampson, J. H. (2015). Tetanus toxoid and CCL3 improve dendritic cell vaccines in mice and glioblastoma patients. Nature, 519(7543), 366–369. https://doi.org/10.1038/nature14320

Besschetnova, T. Y., Ichimura, T., Katebi, N., St. Croix, B., Bonventre, J. V., & Olsen, B. R. (2015). Regulatory mechanisms of anthrax toxin receptor 1-dependent vascular and connective tissue homeostasis. Matrix Biology, 42, 56–73. https://doi.org/10.1016/j.matbio.2014.12.002

Cleland, T. P., & Vashishth, D. (2015). Bone protein extraction without demineralization using principles from hydroxyapatite chromatography. Analytical Biochemistry, 472, 62–66. https://doi.org/10.1016/j.ab.2014.12.006

Moe, S. M., Chen, N. X., Newman, C. L., Organ, J. M., Kneissel, M., Kramer, I., Gattone, V. H., & Allen, M. R. (2015). Anti-Sclerostin Antibody Treatment in a Rat Model of Progressive Renal Osteodystrophy: ANTISCLEROSTIN ANTIBODY TREATMENT IN RAT RENAL OSTEODYSTROPHY. Journal of Bone and Mineral Research, 30(3), 499–509. https://doi.org/10.1002/jbmr.2372

Amend, S. R., Uluckan, O., Hurchla, M., Leib, D., Veis Novack, D., Silva, M., Frazier, W., & Weilbaecher, K. N. (2015). Thrombospondin-1 Regulates Bone Homeostasis Through Effects on Bone Matrix Integrity and Nitric Oxide Signaling in Osteoclasts: THROMBOSPONDIN-1 REGULATES BONE HOMEOSTASIS. Journal of Bone and Mineral Research, 30(1), 106–115. https://doi.org/10.1002/jbmr.2308

Krull, A. C., Shearer, J. K., Gorden, P. J., Cooper, V. L., Phillips, G. J., & Plummer, P. J. (2014). Deep Sequencing Analysis Reveals Temporal Microbiota Changes Associated with Development of Bovine Digital Dermatitis. Infection and Immunity, 82(8), 3359–3373. https://doi.org/10.1128/IAI.02077-14

Damodarasamy, M., Johnson, R. S., Bentov, I., MacCoss, M. J., Vernon, R. B., & Reed, M. J. (2014). Hyaluronan enhances wound repair and increases collagen III in aged dermal wounds: Hyaluronan and wound repair in aging. Wound Repair and Regeneration, 22(4), 521–526. https://doi.org/10.1111/wrr.12192

Heim, C. E., Vidlak, D., Scherr, T. D., Kozel, J. A., Holzapfel, M., Muirhead, D. E., & Kielian, T. (2014). Myeloid-Derived Suppressor Cells Contribute to Staphylococcus aureus Orthopedic Biofilm Infection. The Journal of Immunology, 192(8), 3778–3792. https://doi.org/10.4049/jimmunol.1303408

van der Plas-Duivesteijn, S. J., Mohammed, Y., Dalebout, H., Meijer, A., Botermans, A., Hoogendijk, J. L., Henneman, A. A., Deelder, A. M., Spaink, H. P., & Palmblad, M. (2014). Identifying Proteins in Zebrafish Embryos Using Spectral Libraries Generated from Dissected Adult Organs and Tissues. Journal of Proteome Research, 13(3), 1537–1544. https://doi.org/10.1021/pr4010585

Neely, C. J., Kartchner, L. B., Mendoza, A. E., Linz, B. M., Frelinger, J. A., Wolfgang, M. C., Maile, R., & Cairns, B. A. (2014). Flagellin Treatment Prevents Increased Susceptibility to Systemic Bacterial Infection after Injury by Inhibiting Anti-Inflammatory IL-10+ IL-12- Neutrophil Polarization. PLoS ONE, 9(1), e85623. https://doi.org/10.1371/journal.pone.0085623

Kim, H., Cho, S., Kim, M., Kim, H., Ryu, J., Jo, S., Lee, G., & Ryu, M. (2014). Anti-inflammatory effects of Cryptotympana atrata Fabricius slough shed on contact dermatitis induced by dinitrofluorobenzene in mice. Pharmacognosy Magazine, 10(38), 377. https://doi.org/10.4103/0973-1296.133288

Dhall, S., Do, D. C., Garcia, M., Kim, J., Mirebrahim, S. H., Lyubovitsky, J., Lonardi, S., Nothnagel, E. A., Schiller, N., & Martins-Green, M. (2014). Generating and Reversing Chronic Wounds in Diabetic Mice by Manipulating Wound Redox Parameters. Journal of Diabetes Research, 2014, 1–18. https://doi.org/10.1155/2014/562625

Kim, C.-H., Cheong, K. A., & Lee, A.-Y. (2013). 850nm light-emitting-diode phototherapy plus low-dose tacrolimus (FK-506) as combination therapy in the treatment of dermatophagoides farinae-induced atopic dermatitis-like skin lesions in NC/Nga mice. Journal of Dermatological Science, 72(2), 142–148. https://doi.org/10.1016/j.jdermsci.2013.06.002

Yang, S., Hao, L., McConnell, M., Zhou, X., Wang, M., Zhang, Y., Mountz, J. D., Reddy, M., Eleazer, P. D., Li, Y.-P., & Chen, W. (2013). Inhibition of Rgs10 Expression Prevents Immune Cell Infiltration in Bacteria-induced Inflammatory Lesions and Osteoclast-mediated Bone Destruction. Bone Research, 1(3), 267–281. https://doi.org/10.4248/BR201303005

Liu, B., Escalera, J., Balakrishna, S., Fan, L., Caceres, A. I., Robinson, E., Sui, A., McKay, M. C., McAlexander, M. A., Herrick, C. A., & Jordt, S. E. (2013). TRPA1 controls inflammation and pruritogen responses in allergic contact dermatitis. The FASEB Journal, 27(9), 3549–3563. https://doi.org/10.1096/fj.13-229948

Kim, H., Kim, M., Kim, H., San Lee, G., Gun An, W., & In Cho, S. (2013). Anti-inflammatory activities of Dictamnus dasycarpus Turcz., root bark on allergic contact dermatitis induced by dinitrofluorobenzene in mice. Journal of Ethnopharmacology, 149(2), 471–477. https://doi.org/10.1016/j.jep.2013.06.055

Silver, A. C., Dunne, D. W., Zeiss, C. J., Bockenstedt, L. K., Radolf, J. D., Salazar, J. C., & Fikrig, E. (2013). MyD88 Deficiency Markedly Worsens Tissue Inflammation and Bacterial Clearance in Mice Infected with Treponema pallidum, the Agent of Syphilis. PLoS ONE, 8(8), e71388. https://doi.org/10.1371/journal.pone.0071388

Jiang, H., Chen, W., Zhu, G., Zhang, L., Tucker, B., Hao, L., Feng, S., Ci, H., Ma, J., Wang, L., Stashenko, P., & Li, Y.-P. (2013). RNAi-Mediated Silencing of Atp6i and Atp6i Haploinsufficiency Prevents Both Bone Loss and Inflammation in a Mouse Model of Periodontal Disease. PLoS ONE, 8(4), e58599. https://doi.org/10.1371/journal.pone.0058599

Ma, J., Chen, W., Zhang, L., Tucker, B., Zhu, G., Sasaki, H., Hao, L., Wang, L., Ci, H., Jiang, H., Stashenko, P., & Li, Y.-P. (2013). RNA Interference-Mediated Silencing of Atp6i Prevents Both Periapical Bone Erosion and Inflammation in the Mouse Model of Endodontic Disease. Infection and Immunity, 81(4), 1021–1030. https://doi.org/10.1128/IAI.00756-12

Kim, C.-H., Choi, Y.-S., Cheong, K. Ah., & Lee, A.-Y. (2013). Mechanism underlying the effect of combined therapy using glucosamine and low-dose cyclosporine A on the development of atopic dermatitis-like skin lesions in NC/Nga mice. International Immunopharmacology, 15(2), 424–432. https://doi.org/10.1016/j.intimp.2013.01.005

Dong, C., Sexton, H., Gertrudes, A., Akama, T., Martin, S., Virtucio, C., Chen, C.-W., Fan, X., Wu, A., Bu, W., Liu, L., Feng, L., Jarnagin, K., & Freund, Y. R. (2013). Inhibition of Toll-Like Receptor-Mediated Inflammation In Vitro and In Vivo by a Novel Benzoxaborole. Journal of Pharmacology and Experimental Therapeutics, 344(2), 436–446. https://doi.org/10.1124/jpet.112.200030

Hanstein, R., Negoro, H., Patel, N. K., Charollais, A., Meda, P., Spray, D. C., Suadicani, S. O., & Scemes, E. (2013). Promises and pitfalls of a Pannexin1 transgenic mouse line. Frontiers in Pharmacology, 4. https://doi.org/10.3389/fphar.2013.00061

Carter, L. E., Kilroy, G., Gimble, J. M., & Floyd, Z. E. (2012). An improved method for isolation of RNA from bone. BMC Biotechnology, 12(1), 5. https://doi.org/10.1186/1472-6750-12-5

Song, J. S., Kim, S.-O., Kim, S.-H., Choi, H.-J., Son, H.-K., Jung, H.-S., Kim, C.-S., & Lee, J.-H. (2012). In Vitro and In Vivo Characteristics of Stem Cells Derived from the Periodontal Ligament of Human Deciduous and Permanent Teeth. Tissue Engineering Part A, 18(19–20), 2040–2051. https://doi.org/10.1089/ten.tea.2011.0318

Kim, H., Lee, M. R., Lee, G. S., An, W. G., & Cho, S. I. (2012). Effect of Sophora flavescens Aiton extract on degranulation of mast cells and contact dermatitis induced by dinitrofluorobenzene in mice. Journal of Ethnopharmacology, 142(1), 253–258. https://doi.org/10.1016/j.jep.2012.04.053

Petreaca, M. L., Do, D., Dhall, S., McLelland, D., Serafino, A., Lyubovitsky, J., Schiller, N., & Martins-Green, M. M. (2012). Deletion of a tumor necrosis superfamily gene in mice leads to impaired healing that mimics chronic wounds in humans: LIGHT−/− mice wounds mimic human chronic ulcers. Wound Repair and Regeneration, 20(3), 353–366. https://doi.org/10.1111/j.1524-475X.2012.00785.x

Bessen, R. A., Wilham, J. M., Lowe, D., Watschke, C. P., Shearin, H., Martinka, S., Caughey, B., & Wiley, J. A. (2012). Accelerated Shedding of Prions following Damage to the Olfactory Epithelium. Journal of Virology, 86(3), 1777–1788. https://doi.org/10.1128/JVI.06626-11

Tan, B. K., Li, Q.-Z., Suh, L., Kato, A., Conley, D. B., Chandra, R. K., Zhou, J., Norton, J., Carter, R., Hinchcliff, M., Harris, K., Peters, A., Grammer, L. C., Kern, R. C., Mohan, C., & Schleimer, R. P. (2011). Evidence for intranasal antinuclear autoantibodies in patients with chronic rhinosinusitis with nasal polyps. Journal of Allergy and Clinical Immunology, 128(6), 1198-1206.e1. https://doi.org/10.1016/j.jaci.2011.08.037

Choi, K. Y., Chang, K., Pickel, J. M., Badger, J. D., & Roche, K. W. (2011). Expression of the metabotropic glutamate receptor 5 (mGluR5) induces melanoma in transgenic mice. Proceedings of the National Academy of Sciences, 108(37), 15219–15224. https://doi.org/10.1073/pnas.1107304108

von Grote, E. C., Venkatakrishnan, V., Duo, J., & Stenken, J. A. (2011). Long-term subcutaneous microdialysis sampling and qRT-PCR of MCP-1, IL-6 and IL-10 in freely-moving rats. Mol. BioSyst., 7(1), 150–161. https://doi.org/10.1039/C0MB00059K

Marji, J., O’Donoghue, S. I., McClintock, D., Satagopam, V. P., Schneider, R., Ratner, D., J. Worman, H., Gordon, L. B., & Djabali, K. (2010). Defective Lamin A-Rb Signaling in Hutchinson-Gilford Progeria Syndrome and Reversal by Farnesyltransferase Inhibition. PLoS ONE, 5(6), e11132. https://doi.org/10.1371/journal.pone.0011132

Ke, H., Augustine, C. K., Gandham, V. D., Jin, J. Y., Tyler, D. S., Akiyama, S. K., Hall, R. P., & Zhang, J. Y. (2013). CYLD Inhibits Melanoma Growth and Progression through Suppression of the JNK/AP-1 and β1-Integrin Signaling Pathways. Journal of Investigative Dermatology, 133(1), 221–229. https://doi.org/10.1038/jid.2012.253

Nichols, D. P., Caceres, S., Caverly, L., Fratelli, C., Kim, S. H., Malcolm, K., Poch, K. R., Saavedra, M., Solomon, G., Taylor-Cousar, J., Moskowitz, S., & Nick, J. A. (2013). Effects of azithromycin in Pseudomonas aeruginosa burn wound infection. Journal of Surgical Research, 183(2), 767–776. https://doi.org/10.1016/j.jss.2013.02.003

Brain and nerves

O’Leary, S., Prasai, A., Robledo, A., Thang, C., Wang, Y., Deshpande, R. R., Russell, W. K., Murton, A. J., Wolf, S. E., & El Ayadi, A. (2025). Altered lipid profiles in the prefrontal cortex are associated with neuroinflammation after severe burn injury. Frontiers in Immunology, 16, 1709256. https://doi.org/10.3389/fimmu.2025.1709256

Štefková-Mazochová, K., Danda, H., Mazoch, V., Olejníková-Ladislavová, L., Šíchová, K., Paškanová, N., Vágnerová, M., Jurásek, B., Ryšánek, P., Šíma, M., Šafanda, A., Bui, Q. H., Kuchař, M., & Páleníček, T. (2025). The acute effects of methoxphenidine on behaviour and pharmacokinetics profile in animal model. Progress in Neuro-Psychopharmacology and Biological Psychiatry, 137, 111285. https://doi.org/10.1016/j.pnpbp.2025.111285

Frostadottir, D., Welinder, C., Perez, R., & Dahlin, L. B. (2025). Refinement of Protein Extraction Protocols for Human Peripheral Nerve Tissue. ACS Omega, 10(5), 5111–5118. https://doi.org/10.1021/acsomega.4c11373

Aloui, L., Greene, E. S., Tabler, T., Lassiter, K., Thompson, K., Bottje, W. G., Orlowski, S., & Dridi, S. (2024). Effect of heat stress on the hypothalamic expression profile of water homeostasis‐associated genes in low‐ and high‐water efficient chicken lines. Physiological Reports, 12(5), e15972. https://doi.org/10.14814/phy2.15972

Kimble, A. L., Silva, J., Omar, O. M., Murphy, M., Hensel, J. A., Nicholas, S.-A. E., Jellison, E. R., Reese, B., & Murphy, P. A. (2022). A method for rapid flow-cytometric isolation of endothelial nuclei and RNA from archived frozen brain tissue. Laboratory Investigation, 102(2), 204–211. https://doi.org/10.1038/s41374-021-00698-z

Velasco-Aviles, S., Patel, N., Casillas-Bajo, A., Frutos-Rincón, L., Velasco, E., Gallar, J., Arthur-Farraj, P., Gomez-Sanchez, J. A., & Cabedo, H. (2022). A genetic compensatory mechanism regulated by Jun and Mef2d modulates the expression of distinct class IIa Hdacs to ensure peripheral nerve myelination and repair. eLife, 11, e72917. https://doi.org/10.7554/eLife.72917

Gallart-Palau, X., Guo, X., Serra, A., & Sze, S. K. (2020). Alzheimer’s disease progression characterized by alterations in the molecular profiles and biogenesis of brain extracellular vesicles. Alzheimer’s Research & Therapy, 12(1), 54. https://doi.org/10.1186/s13195-020-00623-4

Reichard, A., & Asosingh, K. (2019). Best Practices for Preparing a Single Cell Suspension from Solid Tissues for Flow Cytometry. Cytometry Part A, 95(2), 219–226. https://doi.org/10.1002/cyto.a.23690

Mahinrad, S., Bulk, M., van der Velpen, I., Mahfouz, A., van Roon-Mom, W., Fedarko, N., Yasar, S., Sabayan, B., van Heemst, D., & van der Weerd, L. (2018). Natriuretic Peptides in Post-mortem Brain Tissue and Cerebrospinal Fluid of Non-demented Humans and Alzheimer’s Disease Patients. Frontiers in Neuroscience, 12, 864. https://doi.org/10.3389/fnins.2018.00864

Jansen, A. H. P., van Hal, M., op den Kelder, I. C., Meier, R. T., de Ruiter, A.-A., Schut, M. H., Smith, D. L., Grit, C., Brouwer, N., Kamphuis, W., Boddeke, H. w. g. m., den Dunnen, W. F. A., van Roon, W. M. C., Bates, G. P., Hol, E. M., & Reits, E. A. (2017). Frequency of nuclear mutant huntingtin inclusion formation in neurons and glia is cell-type-specific. Glia, 65(1), 50–61. https://doi.org/10.1002/glia.23050

Volovitz, I., Shapira, N., Ezer, H., Gafni, A., Lustgarten, M., Alter, T., Ben-Horin, I., Barzilai, O., Shahar, T., Kanner, A., Fried, I., Veshchev, I., Grossman, R., & Ram, Z. (2016). A non-aggressive, highly efficient, enzymatic method for dissociation of human brain-tumors and brain-tissues to viable single-cells. BMC Neuroscience, 17(1), 30. https://doi.org/10.1186/s12868-016-0262-y

Pinacho, R., Vila, E., Prades, R., Tarragó, T., Castro, E., Ferrer, I., & Ramos, B. (2016). The glial phosphorylase of glycogen isoform is reduced in the dorsolateral prefrontal cortex in chronic schizophrenia. Schizophrenia Research. https://doi.org/10.1016/j.schres.2016.04.024

Kim, J. M., Park, S. K., Guo, T. J., Kang, J. Y., Ha, J. S., Lee, D. S., Lee, U., & Heo, H. J. (2016). Anti-amnesic effect of Dendropanax morbifera via JNK signaling pathway on cognitive dysfunction in high-fat diet-induced diabetic mice. Behavioural Brain Research, 312, 39–54. https://doi.org/10.1016/j.bbr.2016.06.013

Hubbard, J. A., Szu, J. I., Yonan, J. M., & Binder, D. K. (2016). Regulation of astrocyte glutamate transporter-1 (GLT1) and aquaporin-4 (AQP4) expression in a model of epilepsy. Experimental Neurology. https://doi.org/10.1016/j.expneurol.2016.05.003

Murray, H. C., Low, V. F., Swanson, M. E. V., Dieriks, B. V., Turner, C., Faull, R. L. M., & Curtis, M. A. (2016). Distribution of PSA-NCAM in normal, Alzheimer’s and Parkinson’s disease human brain. Neuroscience, 330, 359–375. https://doi.org/10.1016/j.neuroscience.2016.06.003

David, C. N., Frias, E. S., Szu, J. I., Vieira, P. A., Hubbard, J. A., Lovelace, J., Michael, M., Worth, D., McGovern, K. E., Ethell, I. M., Stanley, B. G., Korzus, E., Fiacco, T. A., Binder, D. K., & Wilson, E. H. (2016). GLT-1-Dependent Disruption of CNS Glutamate Homeostasis and Neuronal Function by the Protozoan Parasite Toxoplasma gondii. PLOS Pathog, 12(6), e1005643. https://doi.org/10.1371/journal.ppat.1005643

Perland, E., Lekholm, E., Eriksson, M. M., Bagchi, S., Arapi, V., & Fredriksson, R. (2016). The Putative SLC Transporters Mfsd5 and Mfsd11 Are Abundantly Expressed in the Mouse Brain and Have a Potential Role in Energy Homeostasis. PLOS ONE, 11(6), e0156912. https://doi.org/10.1371/journal.pone.0156912

Kumar, M., Belcaid, M., & Nerurkar, V. R. (2016). Identification of host genes leading to West Nile virus encephalitis in mice brain using RNA-seq analysis. Scientific Reports, 6. https://doi.org/10.1038/srep26350

Vadnie, C. A., Ayers-Ringler, J., Oliveros, A., Abulseoud, O. A., Choi, S., Hitschfeld, M. J., & Choi, D.-S. (2016). Antipsychotic-like effects of a neurotensin receptor type 1 agonist. Behavioural Brain Research, 305, 8–17. https://doi.org/10.1016/j.bbr.2016.02.019

Hoover, C. E., Davenport, K. A., Henderson, D. M., Pulscher, L. A., Mathiason, C. K., Zabel, M. D., & Hoover, E. A. (2016). Detection and Quantification of CWD Prions in Fixed Paraffin Embedded Tissues by Real-Time Quaking-Induced Conversion. Scientific Reports, 6. https://doi.org/10.1038/srep25098

Lui, H., Zhang, J., Makinson, S. R., Cahill, M. K., Kelley, K. W., Huang, H.-Y., Shang, Y., Oldham, M. C., Martens, L. H., Gao, F., Coppola, G., Sloan, S. A., Hsieh, C. L., Kim, C. C., Bigio, E. H., Weintraub, S., Mesulam, M.-M., Rademakers, R., Mackenzie, I. R., … Huang, E. J. (2016). Progranulin Deficiency Promotes Circuit-Specific Synaptic Pruning by Microglia via Complement Activation. Cell, 165(4), 921–935. https://doi.org/10.1016/j.cell.2016.04.001

Zeng, X., Wang, H., Xing, X., Wang, Q., & Li, W. (2016). Dexmedetomidine Protects against Transient Global Cerebral Ischemia/Reperfusion Induced Oxidative Stress and Inflammation in Diabetic Rats. PLOS ONE, 11(3), e0151620. https://doi.org/10.1371/journal.pone.0151620

Ayers-Ringler, J. R., Oliveros, A., Qiu, Y., Lindberg, D. M., Hinton, D. J., Moore, R. M., Dasari, S., & Choi, D.-S. (2016). Label-Free Proteomic Analysis of Protein Changes in the Striatum during Chronic Ethanol Use and Early Withdrawal. Frontiers in Behavioral Neuroscience, 10. https://doi.org/10.3389/fnbeh.2016.00046

Bosch, M., Fajardo, A., Alcalá-Vida, R., Fernández-Vidal, A., Tebar, F., Enrich, C., Cardellach, F., Pérez-Navarro, E., & Pol, A. (2016). Hepatic Primary and Secondary Cholesterol Deposition and Damage in Niemann-Pick Disease. The American Journal of Pathology, 186(3), 517–523. https://doi.org/10.1016/j.ajpath.2015.12.002

Bakmiwewa, S. M., Weiser, S., Grey, M., Heng, B., Guillemin, G. J., Ball, H. J., & Hunt, N. H. (2016). Synergistic induction of CXCL10 by interferon-gamma and lymphotoxin-alpha in astrocytes: Possible role in cerebral malaria. Cytokine, 78, 79–86. https://doi.org/10.1016/j.cyto.2015.11.024

Viader, A., Ogasawara, D., Joslyn, C. M., Sanchez-Alavez, M., Mori, S., Nguyen, W., Conti, B., & Cravatt, B. F. (2016). A chemical proteomic atlas of brain serine hydrolases identifies cell type-specific pathways regulating neuroinflammation. eLife, 5, e12345. https://doi.org/10.7554/eLife.12345

Luethy, L. N., Erickson, A. K., Jesudhasan, P. R., Ikizler, M., Dermody, T. S., & Pfeiffer, J. K. (2016). Comparison of three neurotropic viruses reveals differences in viral dissemination to the central nervous system. Virology, 487, 1–10. https://doi.org/10.1016/j.virol.2015.09.019

Gallart-Palau, X., Lee, B. S. T., Adav, S. S., Qian, J., Serra, A., Park, J. E., Lai, M. K. P., Chen, C. P., Kalaria, R. N., & Sze, S. K. (2016). Gender differences in white matter pathology and mitochondrial dysfunction in Alzheimer’s disease with cerebrovascular disease. Molecular Brain, 9, 27. https://doi.org/10.1186/s13041-016-0205-7

Gallart-Palau, X., Serra, A., & Sze, S. K. (2016). Enrichment of extracellular vesicles from tissues of the central nervous system by PROSPR. Molecular Neurodegeneration, 11, 41. https://doi.org/10.1186/s13024-016-0108-1

Kim, J., Shim, J., Lee, S., Cho, W.-H., Hong, E., Lee, J. H., Han, J.-S., Lee, H. J., & Lee, K. W. (2016). Rg3-enriched ginseng extract ameliorates scopolamine-induced learning deficits in mice. BMC Complementary and Alternative Medicine, 16, 66. https://doi.org/10.1186/s12906-016-1050-z

Hallgren, S., & Viberg, H. (2016). Postnatal exposure to PFOS, but not PBDE 99, disturb dopaminergic gene transcription in the mouse CNS. Environmental Toxicology and Pharmacology, 41, 121–126. https://doi.org/10.1016/j.etap.2015.11.016

Tristán-Noguero, A., Díez, H., Jou, C., Pineda, M., Ormazábal, A., Sánchez, A., Artuch, R., & Garcia-Cazorla, À. (2015). Study of a fetal brain affected by a severe form of tyrosine hydroxylase deficiency, a rare cause of early parkinsonism. Metabolic Brain Disease. https://doi.org/10.1007/s11011-015-9780-z

Hajkova, K., Jurasek, B., Sykora, D., Palenicek, T., Miksatkova, P., & Kuchar, M. (2015). Salting-out-assisted liquid–liquid extraction as a suitable approach for determination of methoxetamine in large sets of tissue samples. Analytical and Bioanalytical Chemistry. https://doi.org/10.1007/s00216-015-9221-1

Wang, Y., Billon, C., Walker, J. K., & Burris, T. P. (2015). Therapeutic Effect of a Synthetic RORα/γ Agonist in an Animal Model of Autism. ACS Chemical Neuroscience. https://doi.org/10.1021/acschemneuro.5b00159

Evers, M. M., Schut, M. H., Pepers, B. A., Atalar, M., van Belzen, M. J., Faull, R. L., Roos, R. A., & van Roon-Mom, W. M. (2015). Making (anti-) sense out of huntingtin levels in Huntington disease. Molecular Neurodegeneration, 10(1). https://doi.org/10.1186/s13024-015-0018-7

Kumar, M., Roe, K., O’Connell, M., & Nerurkar, V. R. (2015). Induction of virus-specific effector immune cell response limits virus replication and severe disease in mice infected with non-lethal West Nile virus Eg101 strain. Journal of Neuroinflammation, 12(1). https://doi.org/10.1186/s12974-015-0400-y

Khademi, S., Frye, M. A., Jeckel, K. M., Schroeder, T., Monnet, E., Irwin, D. C., Cole, P. A., Bell, C., Miller, B. F., & Hamilton, K. L. (2015). Hypoxia mediated pulmonary edema: potential influence of oxidative stress, sympathetic activation and cerebral blood flow. BMC Physiology, 15(1). https://doi.org/10.1186/s12899-015-0018-4

Semple, B. D., Noble-Haeusslein, L. J., Gooyit, M., Tercovich, K. G., Peng, Z., Nguyen, T. T., Schroeder, V. A., Suckow, M. A., Chang, M., Raber, J., & Trivedi, A. (2015). Early Gelatinase Activity Is Not a Determinant of Long-Term Recovery after Traumatic Brain Injury in the Immature Mouse. PLOS ONE, 10(11), e0143386. https://doi.org/10.1371/journal.pone.0143386

Lee, M., Chen, Z., Tomlinson, B. N., Gooyit, M., Hesek, D., Juárez, M. R., Nizam, R., Boggess, B., Lastochkin, E., Schroeder, V. A., Wolter, W. R., Suckow, M. A., Cui, J., Mobashery, S., Gu, Z., & Chang, M. (2015). Water-Soluble MMP-9 Inhibitor Reduces Lesion Volume after Severe Traumatic Brain Injury. ACS Chemical Neuroscience, 6(10), 1658–1664. https://doi.org/10.1021/acschemneuro.5b00140

Yuan, Z.-X., & Rapoport, S. I. (2015). Transient postnatal fluoxetine decreases brain concentrations of 20-HETE and 15-epi-LXA4, arachidonic acid metabolites in adult mice. Prostaglandins, Leukotrienes and Essential Fatty Acids (PLEFA), 101, 9–14. https://doi.org/10.1016/j.plefa.2015.07.002

Yau, B., Mitchell, A. J., Too, L. K., Ball, H. J., & Hunt, N. H. (2015). Interferon-γ-Induced Nitric Oxide Synthase-2 Contributes to Blood/Brain Barrier Dysfunction and Acute Mortality in Experimental Streptococcus pneumoniae Meningitis. Journal of Interferon & Cytokine Research. https://doi.org/10.1089/jir.2015.0078

Wong, R. Y., & Godwin, J. (2015). Neurotranscriptome profiles of multiple zebrafish strains. Genomics Data, 5, 206–209. https://doi.org/10.1016/j.gdata.2015.06.004

Hallgren, S., Fredriksson, A., & Viberg, H. (2015). More signs of neurotoxicity of surfactants and flame retardants – Neonatal PFOS and PBDE 99 cause transcriptional alterations in cholinergic genes in the mouse CNS. Environmental Toxicology and Pharmacology, 40(2), 409–416. https://doi.org/10.1016/j.etap.2015.06.014

Crowell, J., Hughson, A., Caughey, B., & Bessen, R. A. (2015). Host determinants of prion strain diversity independent of prion protein genotype. Journal of Virology, JVI.01586-15. https://doi.org/10.1128/JVI.01586-15

Zhou, J., Coles, L. D., Kartha, R. V., Nash, N., Mishra, U., Lund, T. C., & Cloyd, J. C. (2015). Intravenous Administration of Stable-Labeled N-Acetylcysteine Demonstrates an Indirect Mechanism for Boosting Glutathione and Improving Redox Status. Journal of Pharmaceutical Sciences, 104(8), 2619–2626. https://doi.org/10.1002/jps.24482

Chen, Y. L., Tsaur, M. L., Wang, S. W., Wang, T. Y., Hung, Y. C., Lin, C. S., Chang, Y. F., Wang, Y. C., Shiue, S. J., & Cheng, J. K. (2015). Chronic intrathecal infusion of mibefradil, ethosuximide and nickel attenuates nerve ligation-induced pain in rats. British Journal of Anaesthesia, 115(1), 105–111. https://doi.org/10.1093/bja/aev198

Xu, X.-F., Li, T., Wang, D.-D., Chen, B., Wang, Y., & Chen, Z.-Y. (2015). Integrin-linked Kinase is Essential for Environmental Enrichment Enhanced Hippocampal Neurogenesis and Memory. Scientific Reports, 5, 11456. https://doi.org/10.1038/srep11456

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Park, J., Zhang, Y., Vykhodtseva, N., Jolesz, F. A., & McDannold, N. J. (2012). The kinetics of blood brain barrier permeability and targeted doxorubicin delivery into brain induced by focused ultrasound. Journal of Controlled Release, 162(1), 134–142. https://doi.org/10.1016/j.jconrel.2012.06.012

Kervezee, L., Hartman, R., van den Berg, D.-J., Shimizu, S., Emoto-Yamamoto, Y., Meijer, J. H., & de Lange, E. C. M. (2014). Diurnal Variation in P-glycoprotein-Mediated Transport and Cerebrospinal Fluid Turnover in the Brain. The AAPS Journal, 16(5), 1029–1037. https://doi.org/10.1208/s12248-014-9625-4

Singh, C. (2010). Memory abnormalities in Alzheimer’s disease and anxiety models. University of Southern California.

Eye tissues

Gooding, S. W., Chrenek, M. A., Ferdous, S., Nickerson, J. M., & Boatright, J. H. (2018). Set screw homogenization of murine ocular tissue, including the whole eye. Molecular Vision, 24, 690–699.

Zhou, Y., Bennett, T. M., & Shiels, A. (2016). Lens ER-stress response during cataract development in Mip-mutant mice. Biochimica et Biophysica Acta (BBA) – Molecular Basis of Disease, 1862(8), 1433–1442. https://doi.org/10.1016/j.bbadis.2016.05.003

Charbel Issa, P., Barnard, A. R., Herrmann, P., Washington, I., & MacLaren, R. E. (2015). Rescue of the Stargardt phenotype in Abca4 knockout mice through inhibition of vitamin A dimerization. Proceedings of the National Academy of Sciences, 112(27), 8415–8420. https://doi.org/10.1073/pnas.1506960112

Can, N., Catak, O., Turgut, B., Demir, T., Ilhan, N., Kuloglu, T., & Ozercan, I. H. (2015). Neuroprotective and&nbsp;antioxidant effects of ghrelin in an experimental glaucoma model. Drug Design, Development and Therapy, 2819. https://doi.org/10.2147/DDDT.S83067

Patil, H., Saha, A., Senda, E., Cho, K., Haque, M., Yu, M., Qiu, S., Yoon, D., Hao, Y., Peachey, N. S., & Ferreira, P. A. (2014). Selective Impairment of a Subset of Ran-GTP-binding Domains of Ran-binding Protein 2 (Ranbp2) Suffices to Recapitulate the Degeneration of the Retinal Pigment Epithelium (RPE) Triggered by Ranbp2 Ablation. Journal of Biological Chemistry, 289(43), 29767–29789. https://doi.org/10.1074/jbc.M114.586834

Griffith, G. L., Kasus-Jacobi, A., Lerner, M. R., & Pereira, H. A. (2014). Corneal Wound Healing, a Newly Identified Function of CAP37, Is Mediated by Protein Kinase C Delta (PKCδ). Investigative Opthalmology & Visual Science, 55(8), 4886. https://doi.org/10.1167/iovs.14-14461

Lydic, T. A., Busik, J. V., & Reid, G. E. (2014). A monophasic extraction strategy for the simultaneous lipidome analysis of polar and nonpolar retina lipids. The Journal of Lipid Research, 55(8), 1797–1809. https://doi.org/10.1194/jlr.D050302

Aung, M. H., Park, H. n., Han, M. K., Obertone, T. S., Abey, J., Aseem, F., Thule, P. M., Iuvone, P. M., & Pardue, M. T. (2014). Dopamine Deficiency Contributes to Early Visual Dysfunction in a Rodent Model of Type 1 Diabetes. Journal of Neuroscience, 34(3), 726–736. https://doi.org/10.1523/JNEUROSCI.3483-13.2014

Cho, K., Haque, M., Wang, J., Yu, M., Hao, Y., Qiu, S., Pillai, I. C. L., Peachey, N. S., & Ferreira, P. A. (2013). Distinct and Atypical Intrinsic and Extrinsic Cell Death Pathways between Photoreceptor Cell Types upon Specific Ablation of Ranbp2 in Cone Photoreceptors. PLoS Genetics, 9(6), e1003555. https://doi.org/10.1371/journal.pgen.1003555

Mihai, D. M., Jiang, H., Blaner, W. S., Romanov, A., & Washington, I. (2013). The retina rapidly incorporates ingested C20-D₃-vitamin A in a swine model. Molecular Vision, 19, 1677–1683.

Glandular tissue

Lee, D., Ahn, C., Hong, E.-J., An, B.-S., Hyun, S.-H., Choi, K.-C., & Jeung, E.-B. (2016). 2,4,6-Tribromophenol Interferes with the Thyroid Hormone System by Regulating Thyroid Hormones and the Responsible Genes in Mice. International Journal of Environmental Research and Public Health, 13(7), 697. https://doi.org/10.3390/ijerph13070697

Johns, M., Esmaeili Mohsen Abadi, S., Malik, N., Lee, J., Neumann, W. L., Rausaria, S., Imani-Nejad, M., McPherson, T., Schober, J., & Kwon, G. (2016). Oral administration of SR-110, a peroxynitrite decomposing catalyst, enhances glucose homeostasis, insulin signaling, and islet architecture in B6D2F1 mice fed a high fat diet. Archives of Biochemistry and Biophysics, 596, 126–137. https://doi.org/10.1016/j.abb.2016.03.002

Kwon, J. J., Nabinger, S. C., Vega, Z., Sahu, S. S., Alluri, R. K., Abdul-Sater, Z., Yu, Z., Gore, J., Nalepa, G., Saxena, R., Korc, M., & Kota, J. (2015). Pathophysiological role of microRNA-29 in pancreatic cancer stroma. Scientific Reports, 5, 11450. https://doi.org/10.1038/srep11450

Hurley-Sanders, J. L., Levine, J. F., Nelson, S. A. C., Law, J. M., Showers, W. J., & Stoskopf, M. K. (2015). Key metabolites in tissue extracts of Elliptio complanata identified using 1H nuclear magnetic resonance spectroscopy. Conservation Physiology, 3(1), cov023–cov023. https://doi.org/10.1093/conphys/cov023

Farrell, K. F., Krishnamachari, S., Villanueva, E., Lou, H., Alerte, T. N. M., Peet, E., Drolet, R. E., & Perez, R. G. (2014). Non-motor parkinsonian pathology in aging A53T α-Synuclein mice is associated with progressive synucleinopathy and altered enzymatic function. Journal of Neurochemistry, 128(4), 536–546. https://doi.org/10.1111/jnc.12481

Wang, Y., Zhang, Y., Yang, J., Ni, X., Liu, S., Li, Z., E. Hodges, S., E. Fisher, W., C. Brunicardi, F., A. Gibbs, R., Gingras, M.-C., & Li, M. (2012). Genomic Sequencing of Key Genes in Mouse Pancreatic Cancer Cells. Current Molecular Medicine, 12(3), 331–341. https://doi.org/10.2174/156652412799218868

Giera, S., Bansal, R., Ortiz-Toro, T. M., Taub, D. G., & Zoeller, R. T. (2011). Individual Polychlorinated Biphenyl (PCB) Congeners Produce Tissue- and Gene-Specific Effects on Thyroid Hormone Signaling during Development. Endocrinology, 152(7), 2909–2919. https://doi.org/10.1210/en.2010-1490

Heart

Malania, L., Bai, Y., Osikowicz, L. M., Tsertsvadze, N., Katsitadze, G., Imnadze, P., & Kosoy, M. (2016). Prevalence and Diversity of Bartonella Species in Rodents from Georgia (Caucasus). The American Journal of Tropical Medicine and Hygiene, 16–0041. https://doi.org/10.4269/ajtmh.16-0041

Zhang, F., Hartnett, S., Sample, A., Schnack, S., & Li, Y. (2016). High fat diet induced alterations of atrial electrical activities in mice. American Journal of Cardiovascular Disease, 6(1), 1–9. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4788723/

Hernandez-Anzaldo, S., Berry, E., Brglez, V., Leung, D., Yun, T. J., Lee, J. S., Filep, J. G., Kassiri, Z., Cheong, C., Lambeau, G., Lehner, R., & Fernandez-Patron, C. (2015). Identification of a Novel Heart-Liver Axis: Matrix Metalloproteinase-2 Negatively Regulates Cardiac Secreted Phospholipase A2 to Modulate Lipid Metabolism and Inflammation in the Liver. Journal of the American Heart Association, 4(11), e002553–e002553. https://doi.org/10.1161/JAHA.115.002553

Koren, L., Alishekevitz, D., Elhanani, O., Nevelsky, A., Hai, T., Kehat, I., Shaked, Y., & Aronheim, A. (2015). ATF3-dependent cross-talk between cardiomyocytes and macrophages promotes cardiac maladaptive remodeling. International Journal of Cardiology, 198, 232–240. https://doi.org/10.1016/j.ijcard.2015.06.099

Pappas, C. T., Mayfield, R. M., Henderson, C., Jamilpour, N., Cover, C., Hernandez, Z., Hutchinson, K. R., Chu, M., Nam, K.-H., Valdez, J. M., Wong, P. K., Granzier, H. L., & Gregorio, C. C. (2015). Knockout of Lmod2 results in shorter thin filaments followed by dilated cardiomyopathy and juvenile lethality. Proceedings of the National Academy of Sciences, 201508273. https://doi.org/10.1073/pnas.1508273112

Manning, J. R., Withers, C. N., Levitan, B., Smith, J. D., Andres, D. A., & Satin, J. (2015). Loss of Rad-GTPase produces a novel adaptive cardiac phenotype resistant to systolic decline with aging. American Journal of Physiology – Heart and Circulatory Physiology, 309(8), H1336–H1345. https://doi.org/10.1152/ajpheart.00389.2015

Kolb, T. M., Peabody, J., Baddoura, P., Fallica, J., Mock, J. R., Singer, B. D., D’Alessio, F. R., Damarla, M., Damico, R. L., & Hassoun, P. M. (2015). Right ventricular angiogenesis is an early adaptive response to chronic hypoxia-induced pulmonary hypertension. Microcirculation, n/a-n/a. https://doi.org/10.1111/micc.12247

Hezel, M. P., Liu, M., Schiffer, T. A., Larsen, F. J., Checa, A., Wheelock, C. E., Carlström, M., Lundberg, J. O., & Weitzberg, E. (2015). Effects of long-term dietary nitrate supplementation in mice. Redox Biology, 5, 234–242. https://doi.org/10.1016/j.redox.2015.05.004

Sjögren, B., Swaney, S., & Neubig, R. R. (2015). FBXO44-Mediated Degradation of RGS2 Protein Uniquely Depends on a Cullin 4B/DDB1 Complex. PLOS ONE, 10(5), e0123581. https://doi.org/10.1371/journal.pone.0123581

Mootz, J. M., Benson, M. A., Heim, C. E., Crosby, H. A., Kavanaugh, J. S., Dunman, P. M., Kielian, T., Torres, V. J., & Horswill, A. R. (2015). Rot is a key regulator of Staphylococcus aureus biofilm formation: Rot regulates S . aureus biofilm formation. Molecular Microbiology, 96(2), 388–404. https://doi.org/10.1111/mmi.12943

Lemon, D. D., Harrison, B. C., Horn, T. R., Stratton, M. S., Ferguson, B. S., Wempe, M. F., & McKinsey, T. A. (2015). Promiscuous actions of small molecule inhibitors of the protein kinase D-class IIa HDAC axis in striated muscle. FEBS Letters, 589(10), 1080–1088. https://doi.org/10.1016/j.febslet.2015.03.017

Berry, E., Hernandez-Anzaldo, S., Ghomashchi, F., Lehner, R., Murakami, M., Gelb, M. H., Kassiri, Z., Wang, X., & Fernandez-Patron, C. (2015). Matrix Metalloproteinase-2 Negatively Regulates Cardiac Secreted Phospholipase A2 to Modulate Inflammation and Fever. Journal of the American Heart Association, 4(4), e001868–e001868. https://doi.org/10.1161/JAHA.115.001868

Schisler, J. C., Grevengoed, T. J., Pascual, F., Cooper, D. E., Ellis, J. M., Paul, D. S., Willis, M. S., Patterson, C., Jia, W., & Coleman, R. A. (2015). Cardiac Energy Dependence on Glucose Increases Metabolites Related to Glutathione and Activates Metabolic Genes Controlled by Mechanistic Target of Rapamycin. Journal of the American Heart Association, 4(2), e001136–e001136. https://doi.org/10.1161/JAHA.114.001136

Zhang, Z., He, L., Hu, S., Wang, Y., Lai, Q., Yang, P., Yu, Q., Zhang, S., Xiong, F., Simsekyilmaz, S., Ning, Q., Li, J., Zhang, D., Zhang, H., Xiang, X., Zhou, Z., Sun, H., & Wang, C.-Y. (2015). AAL exacerbates pro-inflammatory response in macrophages by regulating Mincle/Syk/Card9 signaling along with the Nlrp3 inflammasome assembly. American Journal of Translational Research, 7(10), 1812–1825.

Song, B., Liu, Y., Parman, T., Liu, S., Miller, J. K., Liu, X., Tanga, M. J., & Mirsalis, J. (2014). Quantitative Proteomics for Cardiac Biomarker Discovery Using Isoproterenol-Treated Nonhuman Primates. Journal of Proteome Research, 13(12), 5909–5917. https://doi.org/10.1021/pr500835w

Drake, J. C., Bruns, D. R., Peelor, F. F., Biela, L. M., Miller, R. A., Hamilton, K. L., & Miller, B. F. (2014). Long-lived crowded-litter mice have an age-dependent increase in protein synthesis to DNA synthesis ratio and mTORC1 substrate phosphorylation. AJP: Endocrinology and Metabolism, 307(9), E813–E821. https://doi.org/10.1152/ajpendo.00256.2014

Ablorh, N.-A. D., Dong, X., James, Z. M., Xiong, Q., Zhang, J., Thomas, D. D., & Karim, C. B. (2014). Synthetic Phosphopeptides Enable Quantitation of the Content and Function of the Four Phosphorylation States of Phospholamban in Cardiac Muscle. Journal of Biological Chemistry, 289(42), 29397–29405. https://doi.org/10.1074/jbc.M114.556621

Wang, X., Huang, W., Yang, Y., Wang, Y., Peng, T., Chang, J., Caldwell, C. C., Zingarelli, B., & Fan, G.-C. (2014). Loss of duplexmiR-223 (5p and 3p) aggravates myocardial depression and mortality in polymicrobial sepsis. Biochimica et Biophysica Acta (BBA) – Molecular Basis of Disease, 1842(5), 701–711. https://doi.org/10.1016/j.bbadis.2014.01.012

Williams, S. M., Golden-Mason, L., Ferguson, B. S., Schuetze, K. B., Cavasin, M. A., Demos-Davies, K., Yeager, M. E., Stenmark, K. R., & McKinsey, T. A. (2014). Class I HDACs regulate angiotensin II-dependent cardiac fibrosis via fibroblasts and circulating fibrocytes. Journal of Molecular and Cellular Cardiology, 67, 112–125. https://doi.org/10.1016/j.yjmcc.2013.12.013

Lassaletta, A. D., Elmadhun, N. Y., Burgess, T. A., Bianchi, C., Sabe, A. A., Robich, M. P., Chu, L. M., & Sellke, F. W. (2014). Microvascular Notch Signaling Is Upregulated in Response to Vascular Endothelial Growth Factor and Chronic Myocardial Ischemia. Circulation Journal, 78(3), 743–751. https://doi.org/10.1253/circj.CJ-13-0685

Cavasin, M. A., Demos-Davies, K. M., Schuetze, K. B., Blakeslee, W. W., Stratton, M. S., Tuder, R. M., & McKinsey, T. A. (2014). Reversal of severe angioproliferative pulmonary arterial hypertension and right ventricular hypertrophy by combined phosphodiesterase-5 and endothelin receptor inhibition. Journal of Translational Medicine, 12(1), 314. https://doi.org/10.1186/s12967-014-0314-y

Drake, J. C., Peelor, F. F., Biela, L. M., Watkins, M. K., Miller, R. A., Hamilton, K. L., & Miller, B. F. (2013). Assessment of Mitochondrial Biogenesis and mTORC1 Signaling During Chronic Rapamycin Feeding in Male and Female Mice. The Journals of Gerontology Series A: Biological Sciences and Medical Sciences, 68(12), 1493–1501. https://doi.org/10.1093/gerona/glt047

Lassaletta, A. D., Elmadhun, N. Y., Liu, Y., Feng, J., Burgess, T. A., Karlson, N. W., Laham, R. J., & Sellke, F. W. (2013). Ethanol Promotes Arteriogenesis and Restores Perfusion to Chronically Ischemic Myocardium. Circulation, 128(11_suppl_1), S136–S143. https://doi.org/10.1161/CIRCULATIONAHA.112.000207

Koren, L., Elhanani, O., Kehat, I., Hai, T., & Aronheim, A. (2013). Adult Cardiac Expression of the Activating Transcription Factor 3, ATF3, Promotes Ventricular Hypertrophy. PLoS ONE, 8(7), e68396. https://doi.org/10.1371/journal.pone.0068396

Lassaletta, A. D., Chu, L. M., Elmadhun, N. Y., Robich, M. P., Hoffman, Z. G., Kim, D. J., & Sellke, F. W. (2013). Mechanism for reduced pericardial adhesion formation in hypercholesterolemic swine supplemented with alcohol. European Journal of Cardio-Thoracic Surgery, 43(5), 1058–1064. https://doi.org/10.1093/ejcts/ezs488

Miller, B. F., Robinson, M. M., Reuland, D. J., Drake, J. C., Peelor, F. F., Bruss, M. D., Hellerstein, M. K., & Hamilton, K. L. (2013). Calorie Restriction Does Not Increase Short-term or Long-term Protein Synthesis. The Journals of Gerontology Series A: Biological Sciences and Medical Sciences, 68(5), 530–538. https://doi.org/10.1093/gerona/gls219

Moghadaszadeh, B., Rider, B. E., Lawlor, M. W., Childers, M. K., Grange, R. W., Gupta, K., Boukedes, S. S., Owen, C. A., & Beggs, A. H. (2013). Selenoprotein N deficiency in mice is associated with abnormal lung development. The FASEB Journal, 27(4), 1585–1599. https://doi.org/10.1096/fj.12-212688

Wang, H., Sreenivasan, U., Gong, D.-W., O’Connell, K. A., Dabkowski, E. R., Hecker, P. A., Ionica, N., Konig, M., Mahurkar, A., Sun, Y., Stanley, W. C., & Sztalryd, C. (2013). Cardiomyocyte-specific perilipin 5 overexpression leads to myocardial steatosis and modest cardiac dysfunction. The Journal of Lipid Research, 54(4), 953–965. https://doi.org/10.1194/jlr.M032466

Hoang, H. D., Prasain, J. K., Dorand, D., & Miller, M. A. (2013). A Heterogeneous Mixture of F-Series Prostaglandins Promotes Sperm Guidance in the Caenorhabditis elegans Reproductive Tract. PLoS Genetics, 9(1), e1003271. https://doi.org/10.1371/journal.pgen.1003271

Veltrop, M., van der Kaa, J., Claassens, J., van Vliet, L., Verbeek, S., & Aartsma-Rus, A. (2013). Generation of Embryonic Stem Cells and Mice for Duchenne Research. PLoS Currents. https://doi.org/10.1371/currents.md.cbf1d33001de80923ce674302cad7925

Vedantham, V., Evangelista, M., Huang, Y., & Srivastava, D. (2013). Spatiotemporal regulation of an Hcn4 enhancer defines a role for Mef2c and HDACs in cardiac electrical patterning. Developmental Biology, 373(1), 149–162. https://doi.org/10.1016/j.ydbio.2012.10.017

Chen, H., Hwang, H., McKee, L. A. K., Perez, J. N., Regan, J. A., Constantopoulos, E., LaFleur, B., & Konhilas, J. P. (2013). Temporal and morphological impact of pressure overload in transgenic FHC mice. Frontiers in Physiology, 4. https://doi.org/10.3389/fphys.2013.00205

Lassaletta, A. D., Chu, L. M., Elmadhun, N. Y., Burgess, T. A., Feng, J., Robich, M. P., & Sellke, F. W. (2012). Cardioprotective effects of red wine and vodka in a model of endothelial dysfunction. Journal of Surgical Research, 178(2), 586–592. https://doi.org/10.1016/j.jss.2012.06.009

Leontieva, O. V., Paszkiewicz, G. M., & Blagosklonny, M. V. (2012). Mechanistic or mammalian target of rapamycin (mTOR) may determine robustness in young male mice at the cost of accelerated aging. Aging, 4(12), 899–916.

Hecker, P. A., Mapanga, R. F., Kimar, C. P., Ribeiro, R. F., Brown, B. H., O’Connell, K. A., Cox, J. W., Shekar, K. C., Asemu, G., Essop, M. F., & Stanley, W. C. (2012). Effects of glucose-6-phosphate dehydrogenase deficiency on the metabolic and cardiac responses to obesogenic or high-fructose diets. AJP: Endocrinology and Metabolism, 303(8), E959–E972. https://doi.org/10.1152/ajpendo.00202.2012

Yang, J., & Xu, X. (2012). Actinin2 is required for the lateral alignment of Z discs and ventricular chamber enlargement during zebrafish cardiogenesis. The FASEB Journal, 26(10), 4230–4242. https://doi.org/10.1096/fj.12-207969

Hanke, M. L., Angle, A., & Kielian, T. (2012). MyD88-Dependent Signaling Influences Fibrosis and Alternative Macrophage Activation during Staphylococcus aureus Biofilm Infection. PLoS ONE, 7(8), e42476. https://doi.org/10.1371/journal.pone.0042476

Genead, R., Fischer, H., Hussain, A., Jaksch, M., Andersson, A. B., Ljung, K., Bulatovic, I., Franco-Cereceda, A., Elsheikh, E., Corbascio, M., Smith, C. I. E., Sylvén, C., & Grinnemo, K.-H. (2012). Ischemia-Reperfusion Injury and Pregnancy Initiate Time-Dependent and Robust Signs of Up-Regulation of Cardiac Progenitor Cells. PLoS ONE, 7(5), e36804. https://doi.org/10.1371/journal.pone.0036804

Cavasin, M. A., Demos-Davies, K., Horn, T. R., Walker, L. A., Lemon, D. D., Birdsey, N., Weiser-Evans, M. C. M., Harral, J., Irwin, D. C., Anwar, A., Yeager, M. E., Li, M., Watson, P. A., Nemenoff, R. A., Buttrick, P. M., Stenmark, K. R., & McKinsey, T. A. (2012). Selective Class I Histone Deacetylase Inhibition Suppresses Hypoxia-Induced Cardiopulmonary Remodeling Through an Antiproliferative Mechanism. Circulation Research, 110(5), 739–748. https://doi.org/10.1161/CIRCRESAHA.111.258426

Miller, B. F., Robinson, M. M., Bruss, M. D., Hellerstein, M., & Hamilton, K. L. (2012). A comprehensive assessment of mitochondrial protein synthesis and cellular proliferation with age and caloric restriction: Caloric restriction and mitochondrial synthesis. Aging Cell, 11(1), 150–161. https://doi.org/10.1111/j.1474-9726.2011.00769.x

Shanks, M. O. (2012). Identification and characterization of an A-kinase anchoring domain in chromodomain helicase binding protein 8. University of Maryland Baltimore.

Pavlov, V. I., La Bonte, L. R., Baldwin, W. M., Markiewski, M. M., Lambris, J. D., & Stahl, G. L. (2012). Absence of Mannose-Binding Lectin Prevents Hyperglycemic Cardiovascular Complications. The American Journal of Pathology, 180(1), 104–112. https://doi.org/10.1016/j.ajpath.2011.09.026

Carlstrom, M., Persson, A. E. G., Larsson, E., Hezel, M., Scheffer, P. G., Teerlink, T., Weitzberg, E., & Lundberg, J. O. (2011). Dietary nitrate attenuates oxidative stress, prevents cardiac and renal injuries, and reduces blood pressure in salt-induced hypertension. Cardiovascular Research, 89(3), 574–585. https://doi.org/10.1093/cvr/cvq366

O’Shea, K. M., Chess, D. J., Khairallah, R. J., Rastogi, S., Hecker, P. A., Sabbah, H. N., Walsh, K., & Stanley, W. C. (2010). Effects of adiponectin deficiency on structural and metabolic remodeling in mice subjected to pressure overload. AJP: Heart and Circulatory Physiology, 298(6), H1639–H1645. https://doi.org/10.1152/ajpheart.00957.2009

O’Shea, K. M., Chess, D. J., Khairallah, R. J., Hecker, P. A., Lei, B., Walsh, K., Des Rosiers, C., & Stanley, W. C. (2010). ω-3 Polyunsaturated fatty acids prevent pressure overload-induced ventricular dilation and decrease in mitochondrial enzymes despite no change in adiponectin. Lipids in Health and Disease, 9(1), 95. https://doi.org/10.1186/1476-511X-9-95

Neishabouri, S. H., Hutson, S. M., & Davoodi, J. (2015). Chronic activation of mTOR complex 1 by branched chain amino acids and organ hypertrophy. Amino Acids, 47(6), 1167–1182. https://doi.org/10.1007/s00726-015-1944-y

Lemon, D. D., Horn, T. R., Cavasin, M. A., Jeong, M. Y., Haubold, K. W., Long, C. S., Irwin, D. C., McCune, S. A., Chung, E., Leinwand, L. A., & McKinsey, T. A. (2011). Cardiac HDAC6 catalytic activity is induced in response to chronic hypertension. Journal of Molecular and Cellular Cardiology, 51(1), 41–50. https://doi.org/10.1016/j.yjmcc.2011.04.005

O’Shea, K. M. (2010). Omega-3 fatty acids and heart failure. Case Western Reserve University.

Tungjai, M., Whorton, E. B., & Rithidech, K. N. (2013). Persistence of apoptosis and inflammatory responses in the heart and bone marrow of mice following whole-body exposure to 28Silicon (28Si) ions. Radiation and Environmental Biophysics, 52(3), 339–350. https://doi.org/10.1007/s00411-013-0479-4

Intestine and stomach

Jimenez-Rondan, F. R., Ruggiero, C. H., McKinley, K. L., Koh, J., Roberts, J. F., Triplett, E. W., & Cousins, R. J. (2023). Enterocyte-specific deletion of metal transporter Zip14 (Slc39a14) alters intestinal homeostasis through epigenetic mechanisms. American Journal of Physiology-Gastrointestinal and Liver Physiology, 324(3), G159–G176. https://doi.org/10.1152/ajpgi.00244.2022

Ghaisas, S., Langley, M. R., Palanisamy, B. N., Dutta, S., Narayanaswamy, K., Plummer, P. J., Sarkar, S., Ay, M., Jin, H., Anantharam, V., Kanthasamy, A., & Kanthasamy, A. G. (2019). MitoPark transgenic mouse model recapitulates the gastrointestinal dysfunction and gut-microbiome changes of Parkinson’s disease. NeuroToxicology, 75, 186–199. https://doi.org/10.1016/j.neuro.2019.09.004

Xiao, L., Cao, W., Liu, G., Fang, T., Wu, X., Jia, G., Chen, X., Zhao, H., Wang, J., Wu, C., & Cai, J. (2016). Arginine, N-carbamylglutamate, and glutamine exert protective effects against oxidative stress in rat intestine. Animal Nutrition. https://doi.org/10.1016/j.aninu.2016.04.005

Jensen, A. R., Manning, M. M., Khaneki, S., Drucker, N. A., & Markel, T. A. (2016). Harvest tissue source does not alter the protective power of stromal cell therapy after intestinal ischemia and reperfusion injury. Journal of Surgical Research. https://doi.org/10.1016/j.jss.2016.05.006

Rocha, B. S., Lundberg, J. O., Radi, R., & Laranjinha, J. (2016). Role of nitrite, urate and pepsin in the gastroprotective effects of saliva. Redox Biology, 8, 407–414. https://doi.org/10.1016/j.redox.2016.04.002

Chen, I.-T., Lee, D.-Y., Huang, Y.-T., Kou, G.-H., Wang, H.-C., Chang, G.-D., & Lo, C.-F. (2016). Six Hours after Infection, the Metabolic Changes Induced by WSSV Neutralize the Host’s Oxidative Stress Defenses. Scientific Reports, 6, 27732. https://doi.org/10.1038/srep27732

Lei, S., Ryu, J., Wen, K., Twitchell, E., Bui, T., Ramesh, A., Weiss, M., Li, G., Samuel, H., Clark-Deener, S., Jiang, X., Lee, K., & Yuan, L. (2016). Increased and prolonged human norovirus infection in RAG2/IL2RG deficient gnotobiotic pigs with severe combined immunodeficiency. Scientific Reports, 6. https://doi.org/10.1038/srep25222

Lei, S., Samuel, H., Twitchell, E., Bui, T., Ramesh, A., Wen, K., Weiss, M., Li, G., Yang, X., Jiang, X., & Yuan, L. (2016). Enterobacter cloacae inhibits human norovirus infectivity in gnotobiotic pigs. Scientific Reports, 6. https://doi.org/10.1038/srep25017

Bennike, T. B., Kastaniegaard, K., Padurariu, S., Gaihede, M., Birkelund, S., Andersen, V., & Stensballe, A. (2016). Comparing the proteome of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human tissue samples. EuPA Open Proteomics, 10, 9–18. https://doi.org/10.1016/j.euprot.2015.10.001

Bennike, T. B., Kastaniegaard, K., Padurariu, S., Gaihede, M., Birkelund, S., Andersen, V., & Stensballe, A. (2016). Proteome stability analysis of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human colon mucosal biopsies. Data in Brief, 6, 942–947. https://doi.org/10.1016/j.dib.2016.01.061

Park, W. C., Kim, H.-R., Kang, D. B., Ryu, J.-S., Choi, K.-H., Lee, G.-O., Yun, K. J., Kim, K. Y., Park, R., Yoon, K.-H., Cho, J.-H., Lee, Y.-J., Chae, S.-C., Park, M.-C., & Park, D.-S. (2016). Comparative expression patterns and diagnostic efficacies of SR splicing factors and HNRNPA1 in gastric and colorectal cancer. BMC Cancer, 16, 358. https://doi.org/10.1186/s12885-016-2387-x

Janocko, L., Althouse, A. D., Brand, R. M., Cranston, R. D., & McGowan, I. (2015). The Molecular Characterization of Intestinal Explant HIV Infection Using Polymerase Chain Reaction-Based Techniques. AIDS Research and Human Retroviruses, 31(10), 981–991. https://doi.org/10.1089/aid.2015.0165

Booth, J. S., Salerno-Goncalves, R., Blanchard, T. G., Patil, S. A., Kader, H. A., Safta, A. M., Morningstar, L. M., Czinn, S. J., Greenwald, B. D., & Sztein, M. B. (2015). Mucosal-Associated Invariant T Cells in the Human Gastric Mucosa and Blood: Role in Helicobacter pylori Infection. Frontiers in Immunology, 6. https://doi.org/10.3389/fimmu.2015.00466

Nam, S. H., Kim, D., Lee, M.-S., Lee, D., Kwak, T. K., Kang, M., Ryu, J., Kim, H.-J., Song, H. E., Choi, J., Lee, G.-H., Kim, S.-Y., Park, S. H., Kim, D. G., Kwon, N. H., Kim, T. Y., Thiery, J. P., Kim, S., & Lee, J. W. (2015). Noncanonical roles of membranous lysyl-tRNA synthetase in transducing cell-substrate signaling for invasive dissemination of colon cancer spheroids in 3D collagen I gels. Oncotarget, 6(25), 21655–21674. https://doi.org/10.18632/oncotarget.4130

Wang, Y.-M., Chai, S. C., Lin, W., Chai, X., Elias, A., Wu, J., Ong, S. S., Pondugula, S. R., Beard, J. A., Schuetz, E. G., Zeng, S., Xie, W., & Chen, T. (2015). Serine 350 of human pregnane X receptor is crucial for its heterodimerization with retinoid X receptor alpha and transactivation of target genes in vitro and in vivo. Biochemical Pharmacology, 96(4), 357–368. https://doi.org/10.1016/j.bcp.2015.06.018

Capitán-Cañadas, F., Ocón, B., Aranda, C. J., Anzola, A., Suárez, M. D., Zarzuelo, A., de Medina, F. S., & Martínez-Augustin, O. (2015). Fructooligosaccharides exert intestinal anti-inflammatory activity in the CD4+ CD62L+ T cell transfer model of colitis in C57BL/6J mice. European Journal of Nutrition. https://doi.org/10.1007/s00394-015-0962-6

Everman, J. L., Eckstein, T. M., Roussey, J., Coussens, P., Bannantine, J. P., & Bermudez, L. E. (2015). Characterization of the inflammatory phenotype of Mycobacterium avium subspecies paratuberculosis using a novel cell culture passage model. Microbiology, 161(7), 1420–1434. https://doi.org/10.1099/mic.0.000106

Wang, S.-Y., Wang, H.-Y., Wang, T.-E., Wang, H.-H., Chang, W.-H., Chu, C.-H., Lin, S.-C., Yeh, H.-I., & Shih, S.-C. (2015). Delayed healing of gastric ulcer is associated with downregulation of connexin 32 in the gastric mucosa. Advances in Digestive Medicine, 2(2), 67–73. https://doi.org/10.1016/j.aidm.2015.01.004

Choong, E., Guo, J., Persson, A., Virding, S., Johansson, I., Mkrtchian, S., & Ingelman-Sundberg, M. (2015). Developmental Regulation and Induction of Cytochrome P450 2W1, an Enzyme Expressed in Colon Tumors. PLOS ONE, 10(4), e0122820. https://doi.org/10.1371/journal.pone.0122820

Nasrollahzadeh, D., Malekzadeh, R., Ploner, A., Shakeri, R., Sotoudeh, M., Fahimi, S., Nasseri-Moghaddam, S., Kamangar, F., Abnet, C. C., Winckler, B., Islami, F., Boffetta, P., Brennan, P., Dawsey, S. M., & Ye, W. (2015). Variations of gastric corpus microbiota are associated with early esophageal squamous cell carcinoma and squamous dysplasia. Scientific Reports, 5, 8820. https://doi.org/10.1038/srep08820

Zhou, Y., Rychahou, P., Wang, Q., Weiss, H. L., & Evers, B. M. (2015). TSC2/mTORC1 signaling controls Paneth and goblet cell differentiation in the intestinal epithelium. Cell Death and Disease, 6(2), e1631. https://doi.org/10.1038/cddis.2014.588

McGowan, I., Janocko, L., Burneisen, S., Bhat, A., & Richardson-Harman, N. (2015). Variability of cytokine gene expression in intestinal tissue and the impact of normalization with the use of reference genes. Cytokine, 71(1), 81–88. https://doi.org/10.1016/j.cyto.2014.08.010

Liu, G., Yan, T., Fang, T., Jia, G., Chen, X., Zhao, H., Wang, J., & Wu, C. (2015). Nutrimetabolomic analysis provides new insights into spermine-induced ileum-system alterations for suckling rats. RSC Adv., 5(60), 48769–48778. https://doi.org/10.1039/C5RA01507C

Mascaraque, C., Aranda, C., Ocón, B., Monte, M. J., Suárez, M. D., Zarzuelo, A., Marín, J. J. G., Martínez-Augustin, O., & de Medina, F. S. (2014). Rutin has intestinal antiinflammatory effects in the CD4+ CD62L+ T cell transfer model of colitis. Pharmacological Research, 90, 48–57. https://doi.org/10.1016/j.phrs.2014.09.005

Goodrich, K. M., Dorenkott, M. R., Ye, L., O’Keefe, S. F., Hulver, M. W., & Neilson, A. P. (2014). Dietary Supplementation with Cocoa Flavanols Does Not Alter Colon Tissue Profiles of Native Flavanols and Their Microbial Metabolites Established during Habitual Dietary Exposure in C57BL/6J Mice. Journal of Agricultural and Food Chemistry, 62(46), 11190–11199. https://doi.org/10.1021/jf503838q

Kang, S., Shields, A. R., Jupatanakul, N., & Dimopoulos, G. (2014). Suppressing Dengue-2 Infection by Chemical Inhibition of Aedes aegypti Host Factors. PLoS Neglected Tropical Diseases, 8(8), e3084. https://doi.org/10.1371/journal.pntd.0003084

Penney, R., Lundgreen, A., Yao-Borengasser, A., Edavana, V., Williams, S., Dhakal, I., Wolff, R., Kadlubar, S., & Slattery, M. (2014). CYP19A1 single nucleotide polymorphism associations with CYP19A1, NF&kappa;B1, and IL6 gene expression in human normal colon and normal liver samples. Pharmacogenomics and Personalized Medicine, 163. https://doi.org/10.2147/PGPM.S62238

Booth, J. S., Toapanta, F. R., Salerno-Goncalves, R., Patil, S., Kader, H. A., Safta, A. M., Czinn, S. J., Greenwald, B. D., & Sztein, M. B. (2014). Characterization and Functional Properties of Gastric Tissue-Resident Memory T Cells from Children, Adults, and the Elderly. Frontiers in Immunology, 5. https://doi.org/10.3389/fimmu.2014.00294

Heinzerling, N. P., Liedel, J. L., Welak, S. R., Fredrich, K., Biesterveld, B. E., Pritchard, K. A., & Gourlay, D. M. (2014). Intestinal alkaline phosphatase is protective to the preterm rat pup intestine. Journal of Pediatric Surgery, 49(6), 954–960. https://doi.org/10.1016/j.jpedsurg.2014.01.031

Goodrich, K. M., & Neilson, A. P. (2014). Simultaneous UPLC–MS/MS analysis of native catechins and procyanidins and their microbial metabolites in intestinal contents and tissues of male Wistar Furth inbred rats. Journal of Chromatography B, 958, 63–74. https://doi.org/10.1016/j.jchromb.2014.03.011

Mapes, B., Chase, M., Hong, E., Ludvik, A., Ceryes, K., Huang, Y., & Kupfer, S. S. (2014). Ex vivo culture of primary human colonic tissue for studying transcriptional responses to 1 ,25(OH)2 and 25(OH) vitamin D. Physiological Genomics, 46(8), 302–308. https://doi.org/10.1152/physiolgenomics.00194.2013

Nugent, J. L., McCoy, A. N., Addamo, C. J., Jia, W., Sandler, R. S., & Keku, T. O. (2014). Altered Tissue Metabolites Correlate with Microbial Dysbiosis in Colorectal Adenomas. Journal of Proteome Research, 13(4), 1921–1929. https://doi.org/10.1021/pr4009783

Jupatanakul, N., Sim, S., & Dimopoulos, G. (2014). Aedes aegypti ML and Niemann-Pick type C family members are agonists of dengue virus infection. Developmental & Comparative Immunology, 43(1), 1–9. https://doi.org/10.1016/j.dci.2013.10.002

Slattery, M. L., Lundgreen, A., Mullany, L. E., Penney, R. B., & Wolff, R. K. (2014). Influence of CHIEF pathway genes on gene expression: a pathway approach to functionality. International Journal of Molecular Epidemiology and Genetics, 5(2), 100–111.

León-Cabrera, S., Callejas, B. E., Ledesma-Soto, Y., Coronel, J., Pérez-Plasencia, C., Gutiérrez-Cirlos, E. B., Ávila-Moreno, F., Rodríguez-Sosa, M., Hernández-Pando, R., Marquina-Castillo, B., Chirino, Y. I., & Terrazas, L. I. (2014). Extraintestinal Helminth Infection Reduces the Development of Colitis-Associated Tumorigenesis. International Journal of Biological Sciences, 10(9), 948–956. https://doi.org/10.7150/ijbs.9033

Naba, A., Clauser, K. R., Whittaker, C. A., Carr, S. A., Tanabe, K. K., & Hynes, R. O. (2014). Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver. BMC Cancer, 14(1), 518. https://doi.org/10.1186/1471-2407-14-518

Kovalenko, P. L., Yuan, L., Sun, K., Kunovska, L., Seregin, S., Amalfitano, A., & Basson, M. D. (2013). Regulation of Epithelial Differentiation in Rat Intestine by Intraluminal Delivery of an Adenoviral Vector or Silencing RNA Coding for Schlafen 3. PLoS ONE, 8(11), e79745. https://doi.org/10.1371/journal.pone.0079745

Kadlubar, S., Penney, R., Lundgreen, A., Yao-Borengassar, A., Koroth-Edavana, V., Williams, S., Wolff, R., & Slattery, M. (2013). Lack of correlation between in silico projection of function and quantitative real-time PCR-determined gene expression levels in colon tissue. Pharmacogenomics and Personalized Medicine, 99. https://doi.org/10.2147/PGPM.S49199

Sim, S., Jupatanakul, N., Ramirez, J. L., Kang, S., Romero-Vivas, C. M., Mohammed, H., & Dimopoulos, G. (2013). Transcriptomic Profiling of Diverse Aedes aegypti Strains Reveals Increased Basal-level Immune Activation in Dengue Virus-refractory Populations and Identifies Novel Virus-vector Molecular Interactions. PLoS Neglected Tropical Diseases, 7(7), e2295. https://doi.org/10.1371/journal.pntd.0002295

Palandra, J., Finelli, A., Zhu, M., Masferrer, J., & Neubert, H. (2013). Highly Specific and Sensitive Measurements of Human and Monkey Interleukin 21 Using Sequential Protein and Tryptic Peptide Immunoaffinity LC-MS/MS. Analytical Chemistry, 85(11), 5522–5529. https://doi.org/10.1021/ac4006765

Rocha, B. S., Gago, B., Barbosa, R. M., Lundberg, J. O., Mann, G. E., Radi, R., & Laranjinha, J. (2013). Pepsin is nitrated in the rat stomach, acquiring antiulcerogenic activity: A novel interaction between dietary nitrate and gut proteins. Free Radical Biology and Medicine, 58, 26–34. https://doi.org/10.1016/j.freeradbiomed.2012.12.017

Rolig, A. S., Cech, C., Ahler, E., Carter, J. E., & Ottemann, K. M. (2013). The Degree of Helicobacter pylori-Triggered Inflammation Is Manipulated by Preinfection Host Microbiota. Infection and Immunity, 81(5), 1382–1389. https://doi.org/10.1128/IAI.00044-13

Mcgowan, I., Hoesley, C., Cranston, R. D., Andrew, P., Janocko, L., Dai, J. Y., Carballo-Dieguez, A., Ayudhya, R. K. N., Piper, J., Hladik, F., & Mayer, K. (2013). A Phase 1 Randomized, Double Blind, Placebo Controlled Rectal Safety and Acceptability Study of Tenofovir 1% Gel (MTN-007). PLoS ONE, 8(4), e60147. https://doi.org/10.1371/journal.pone.0060147

Saleiro, D., Murillo, G., Benya, R. V., Bissonnette, M., Hart, J., & Mehta, R. G. (2012). Estrogen receptor-β protects against colitis-associated neoplasia in mice. International Journal of Cancer, 131(11), 2553–2561. https://doi.org/10.1002/ijc.27578

Araújo-Pérez, F., McCoy, A. N., Okechukwu, C., Carroll, I. M., Smith, K. M., Jeremiah, K., Sandler, R. S., Asher, G. N., & Keku, T. O. (2012). Differences in microbial signatures between rectal mucosal biopsies and rectal swabs. Gut Microbes, 3(6), 530–535. https://doi.org/10.4161/gmic.22157

Kovalenko, P. L., Flanigan, T. L., Chaturvedi, L., & Basson, M. D. (2012). Influence of defunctionalization and mechanical forces on intestinal epithelial wound healing. AJP: Gastrointestinal and Liver Physiology, 303(10), G1134–G1143. https://doi.org/10.1152/ajpgi.00321.2012

Forester, S. C., Gu, Y., & Lambert, J. D. (2012). Inhibition of starch digestion by the green tea polyphenol, (−)-epigallocatechin-3-gallate. Molecular Nutrition & Food Research, 56(11), 1647–1654. https://doi.org/10.1002/mnfr.201200206

Kovalenko, P. L., Kunovska, L., Chen, J., Gallo, K. A., & Basson, M. D. (2012). Loss of MLK3 signaling impedes ulcer healing by modulating MAPK signaling in mouse intestinal mucosa. AJP: Gastrointestinal and Liver Physiology, 303(8), G951–G960. https://doi.org/10.1152/ajpgi.00158.2012

Goodrich, K. M., Fundaro, G., Griffin, L. E., Grant, A., Hulver, M. W., Ponder, M. A., & Neilson, A. P. (2012). Chronic administration of dietary grape seed extract increases colonic expression of gut tight junction protein occludin and reduces fecal calprotectin: a secondary analysis of healthy Wistar Furth rats. Nutrition Research, 32(10), 787–794. https://doi.org/10.1016/j.nutres.2012.09.004

Rolig, A. S., Shanks, J., Carter, J. E., & Ottemann, K. M. (2012). Helicobacter pylori Requires TlpD-Driven Chemotaxis To Proliferate in the Antrum. Infection and Immunity, 80(10), 3713–3720. https://doi.org/10.1128/IAI.00407-12

Sause, W. E., Castillo, A. R., & Ottemann, K. M. (2012). The Helicobacter pylori Autotransporter ImaA (HP0289) Modulates the Immune Response and Contributes to Host Colonization. Infection and Immunity, 80(7), 2286–2296. https://doi.org/10.1128/IAI.00312-12

Alt, C., Lam, J. S., Harrison, M. T., Kershaw, K. M., Samuelsson, S., Toll, L., & D’Andrea, A. (2012). Nociceptin/orphanin FQ inhibition with SB612111 ameliorates dextran sodium sulfate-induced colitis. European Journal of Pharmacology, 683(1–3), 285–293. https://doi.org/10.1016/j.ejphar.2012.03.014

Rolig, A. S., Carter, J. E., & Ottemann, K. M. (2011). Bacterial chemotaxis modulates host cell apoptosis to establish a T-helper cell, type 17 (Th17)-dominant immune response in Helicobacter pylori infection. Proceedings of the National Academy of Sciences, 108(49), 19749–19754. https://doi.org/10.1073/pnas.1104598108

McConnell, B. B., Kim, S. S., Yu, K., Ghaleb, A. M., Takeda, N., Manabe, I., Nusrat, A., Nagai, R., & Yang, V. W. (2011). Krüppel-Like Factor 5 Is Important for Maintenance of Crypt Architecture and Barrier Function in Mouse Intestine. Gastroenterology, 141(4), 1302-1313.e6. https://doi.org/10.1053/j.gastro.2011.06.086

Shaw, A. L., van Ginkel, F. W., Macklin, K. S., & Blake, J. P. (2011). Effects of phytase supplementation in broiler diets on a natural Eimeria challenge in naive and vaccinated birds. Poultry Science, 90(4), 781–790. https://doi.org/10.3382/ps.2010-01158

Repnik, K., & Potočnik, U. (2010). CTLA4 CT60 Single-Nucleotide Polymorphism Is Associated with Slovenian Inflammatory Bowel Disease Patients and Regulates Expression of CTLA4 Isoforms. DNA and Cell Biology, 29(10), 603–610. https://doi.org/10.1089/dna.2010.1021

Lowe, E. L., Crother, T. R., Rabizadeh, S., Hu, B., Wang, H., Chen, S., Shimada, K., Wong, M. H., Michelsen, K. S., & Arditi, M. (2010). Toll-Like Receptor 2 Signaling Protects Mice from Tumor Development in a Mouse Model of Colitis-Induced Cancer. PLoS ONE, 5(9), e13027. https://doi.org/10.1371/journal.pone.0013027

McConnell, B. B., Kim, S. S., Bialkowska, A. B., Yu, K., Sitaraman, S. V., & Yang, V. W. (2011). Krüppel-Like Factor 5 Protects Against Dextran Sulfate Sodium−Induced Colonic Injury in Mice by Promoting Epithelial Repair. Gastroenterology, 140(2), 540-549.e2. https://doi.org/10.1053/j.gastro.2010.10.061

Lu, J., & Grenache, D. G. (2010). High-throughput tissue homogenization method and tissue-based quality control materials for a clinical assay of the intestinal disaccharidases. Clinica Chimica Acta, 411(9–10), 754–757. https://doi.org/10.1016/j.cca.2010.02.009

Goodrich, K. M., Smithson, A. T., Ickes, A. K., & Neilson, A. P. (2015). Pan-colonic pharmacokinetics of catechins and procyanidins in male Sprague–Dawley rats. The Journal of Nutritional Biochemistry. https://doi.org/10.1016/j.jnutbio.2015.04.008

Repnik, K., & Potočnik, U. (2011). Haplotype in the IBD5 region is associated with refractory Crohn’s disease in Slovenian patients and modulates expression of the SLC22A5 gene. Journal of Gastroenterology, 46(9), 1081–1091. https://doi.org/10.1007/s00535-011-0426-6

Kovalenko, P. L., & Basson, M. D. (2012). Changes in morphology and function in small intestinal mucosa after Roux-en-Y surgery in a rat model. Journal of Surgical Research, 177(1), 63–69. https://doi.org/10.1016/j.jss.2012.03.011

Kidney and other urinary organs

Coughlan, M. T., Nguyen, T.-V., Penfold, S. A., Higgins, G. C., Thallas-Bonke, V., Tan, S. M., Bergen, N. J. V., Sourris, K. C., Harcourt, B. E., Thorburn, D. R., Trounce, I. A., Cooper, M. E., & Forbes, J. M. (2016). Mapping time-course mitochondrial adaptations in the kidney in experimental diabetes. Clinical Science, 130(9), 711–720. https://doi.org/10.1042/CS20150838

Lewis, A. J., Dhakal, B. K., Liu, T., & Mulvey, M. A. (2016). Histone Deacetylase 6 Regulates Bladder Architecture and Host Susceptibility to Uropathogenic Escherichia coli. Pathogens, 5(1), 20. https://doi.org/10.3390/pathogens5010020

Rosen, D. A., Hilliard, J. K., Tiemann, K. M., Todd, E. M., Morley, S. C., & Hunstad, D. A. (2015). Klebsiella pneumoniae FimK Promotes Virulence in Murine Pneumonia. Journal of Infectious Diseases, jiv440. https://doi.org/10.1093/infdis/jiv440

Wagers, P. O., Tiemann, K. M., Shelton, K. L., Kofron, W. G., Panzner, M. J., Wooley, K. L., Youngs, W. J., & Hunstad, D. A. (2015). Imidazolium Salts as Small-Molecule Urinary Bladder Exfoliants in a Murine Model. Antimicrobial Agents and Chemotherapy, 59(9), 5494–5502. https://doi.org/10.1128/AAC.00881-15

Danka, E. S., & Hunstad, D. A. (2015). Cathelicidin Augments Epithelial Receptivity and Pathogenesis in Experimental Escherichia coli Cystitis. Journal of Infectious Diseases, 211(7), 1164–1173. https://doi.org/10.1093/infdis/jiu577

Kantharidis, P., Hagiwara, S., Brennan, E., & McClelland, A. D. (2015). Study of microRNA in diabetic nephropathy: Isolation, quantification and biological function: MicroRNA in diabetic nephropathy. Nephrology, 20(3), 132–139. https://doi.org/10.1111/nep.12374

Jiang, J.-X. (2015). DNA Methylation Machinery Mediates the Bladder’s Response to Obstruction [University of Toronto]. https://tspace.library.utoronto.ca/bitstream/1807/69649/1/Jiang_Jia_Xin_201506_MSc_thesis.pdf

Gao, X., Yang, T., Liu, M., Peleli, M., Zollbrecht, C., Weitzberg, E., Lundberg, J. O., Persson, A. E. G., & Carlstrom, M. (2015). NADPH Oxidase in the Renal Microvasculature Is a Primary Target for Blood Pressure-Lowering Effects by Inorganic Nitrate and Nitrite. Hypertension, 65(1), 161–170. https://doi.org/10.1161/HYPERTENSIONAHA.114.04222

Wang, Z., Wei, M., Wang, M., Chen, L., Liu, H., Ren, Y., Shi, K., & Jiang, H. (2014). Inhibition of Macrophage Migration Inhibitory Factor Reduces Diabetic Nephropathy in Type II Diabetes Mice. Inflammation, 37(6), 2020–2029. https://doi.org/10.1007/s10753-014-9934-x

Huang, C.-C., Lou, B.-S., Hsu, F.-L., & Hou, C.-C. (2014). Use of urinary metabolomics to evaluate the effect of hyperuricemia on the kidney. Food and Chemical Toxicology, 74, 35–44. https://doi.org/10.1016/j.fct.2014.08.017

Wang, J.-H., Singh, R., Benoit, M., Keyhan, M., Sylvester, M., Hsieh, M., Thathireddy, A., Hsieh, Y.-J., & Matin, A. C. (2014). Sigma S-Dependent Antioxidant Defense Protects Stationary-Phase Escherichia coli against the Bactericidal Antibiotic Gentamicin. Antimicrobial Agents and Chemotherapy, 58(10), 5964–5975. https://doi.org/10.1128/AAC.03683-14

Hains, D. S., Chen, X., Saxena, V., Barr-Beare, E., Flemming, W., Easterling, R., Becknell, B., Schwartz, G. J., & Schwaderer, A. L. (2014). Carbonic anhydrase 2 deficiency leads to increased pyelonephritis susceptibility. AJP: Renal Physiology, 307(7), F869–F880. https://doi.org/10.1152/ajprenal.00344.2014

Becknell, B., Spencer, J. D., Carpenter, A. R., Chen, X., Singh, A., Ploeger, S., Kline, J., Ellsworth, P., Li, B., Proksch, E., Schwaderer, A. L., Hains, D. S., Justice, S. S., & McHugh, K. M. (2013). Expression and Antimicrobial Function of Beta-Defensin 1 in the Lower Urinary Tract. PLoS ONE, 8(10), e77714. https://doi.org/10.1371/journal.pone.0077714

Karauzum, H., Adhikari, R. P., Sarwar, J., Devi, V. S., Abaandou, L., Haudenschild, C., Mahmoudieh, M., Boroun, A. R., Vu, H., Nguyen, T., Warfield, K. L., Shulenin, S., & Aman, M. J. (2013). Structurally Designed Attenuated Subunit Vaccines for S. aureus LukS-PV and LukF-PV Confer Protection in a Mouse Bacteremia Model. PLoS ONE, 8(6), e65384. https://doi.org/10.1371/journal.pone.0065384

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Chuang, H.-L., Huang, Y.-T., Chiu, C.-C., Liao, C.-D., Hsu, F.-L., Huang, C.-C., & Hou, C.-C. (2012). Metabolomics characterization of energy metabolism reveals glycogen accumulation in gut-microbiota-lacking mice. The Journal of Nutritional Biochemistry, 23(7), 752–758. https://doi.org/10.1016/j.jnutbio.2011.03.019

Lung

Crossey, E., Carty, S., Shao, F., Henao-Vasquez, J., Ysasi, A. B., Zeng, M., Hinds, A., Lo, M., Tilston-Lunel, A., Varelas, X., Jones, M. R., & Fine, A. (2024). Influenza induces lung lymphangiogenesis independent of YAP/TAZ activity in lymphatic endothelial cells. Scientific Reports, 14(1), 21324. https://doi.org/10.1038/s41598-024-72115-6

Na, E., Allen, E., Baird, L. A., Odom, C. V., Korkmaz, F. T., Shenoy, A. T., Matschulat, A. M., Jones, M. R., Kotton, D. N., Mizgerd, J. P., Varelas, X., Traber, K. E., & Quinton, L. J. (2022). Epithelial LIF signaling limits apoptosis and lung injury during bacterial pneumonia. American Journal of Physiology-Lung Cellular and Molecular Physiology, 322(4), L550–L563. https://doi.org/10.1152/ajplung.00325.2021

Traber, K. E., Dimbo, E. L., Symer, E. M., Korkmaz, F. T., Jones, M. R., Mizgerd, J. P., & Quinton, L. J. (2019). Roles of interleukin-11 during acute bacterial pneumonia. PLOS ONE, 14(8), e0221029. https://doi.org/10.1371/journal.pone.0221029

Bawadekar, M., Gendron-Fitzpatrick, A., Rebernick, R., Shim, D., Warner, T. F., Nicholas, A. P., Lundblad, L. K. A., Thompson, P. R., & Shelef, M. A. (2016). Tumor necrosis factor alpha, citrullination, and peptidylarginine deiminase 4 in lung and joint inflammation. Arthritis Research & Therapy, 18, 173. https://doi.org/10.1186/s13075-016-1068-0

Diaz, J., Warren, L., Helfner, L., Xue, X., Chatterjee, P. K., Gupta, M., Solanki, M. H., Esposito, M., Bonagura, V., & Metz, C. N. (2015). Obesity shifts house dust mite-induced airway cellular infiltration from eosinophils to macrophages: effects of glucocorticoid treatment. Immunologic Research, 63(1–3), 197–208. https://doi.org/10.1007/s12026-015-8717-2

Ruhaak, L. R., Taylor, S. L., Stroble, C., Nguyen, U. T., Parker, E. A., Song, T., Lebrilla, C. B., Rom, W. N., Pass, H., Kim, K., Kelly, K., & Miyamoto, S. (2015). Differential N-Glycosylation Patterns in Lung Adenocarcinoma Tissue. Journal of Proteome Research, 14(11), 4538–4549. https://doi.org/10.1021/acs.jproteome.5b00255

Marien, E., Meister, M., Muley, T., Fieuws, S., Bordel, S., Derua, R., Spraggins, J., Van de Plas, R., Dehairs, J., Wouters, J., Bagadi, M., Dienemann, H., Thomas, M., Schnabel, P. A., Caprioli, R. M., Waelkens, E., & Swinnen, J. V. (2015). Non-small cell lung cancer is characterized by dramatic changes in phospholipid profiles: Altered Phospholipid Profiles in NSCLC. International Journal of Cancer, 137(7), 1539–1548. https://doi.org/10.1002/ijc.29517

Hilliard, K. L., Allen, E., Traber, K. E., Kim, Y., Wasserman, G. A., Jones, M. R., Mizgerd, J. P., & Quinton, L. J. (2015). Activation of Hepatic STAT3 Maintains Pulmonary Defense during Endotoxemia. Infection and Immunity, 83(10), 4015–4027. https://doi.org/10.1128/IAI.00464-15

Tian, X., Liu, M., Su, X., Jiang, Z., Ma, Q., Liao, X., Li, X., Zhou, Z., Li, C., & Zhou, R. (2015). Mapping the epitope of neutralizing monoclonal antibodies against human adenovirus type 3. Virus Research, 208, 66–72. https://doi.org/10.1016/j.virusres.2015.06.002

Otsubo, C., Bharathi, S., Uppala, R., Ilkayeva, O. R., Wang, D., McHugh, K., Zou, Y., Wang, J., Alcorn, J. F., Zuo, Y. Y., Hirschey, M. D., & Goetzman, E. S. (2015). Long-chain Acylcarnitines Reduce Lung Function by Inhibiting Pulmonary Surfactant. Journal of Biological Chemistry, 290(39), 23897–23904. https://doi.org/10.1074/jbc.M115.655837

Kim, B. S., Serebreni, L., Fallica, J., Hamdan, O., Wang, L., Johnston, L., Kolb, T., Damarla, M., Damico, R., & Hassoun, P. M. (2015). Cyclin-Dependent Kinase Five Mediates Activation of Lung Xanthine Oxidoreductase in Response to Hypoxia. PLOS ONE, 10(4), e0124189. https://doi.org/10.1371/journal.pone.0124189

Chen, G.-S., Huang, K.-F., Huang, C.-C., & Wang, J.-Y. (2015). Thaliporphine Derivative Improves Acute Lung Injury after Traumatic Brain Injury. BioMed Research International, 2015, 1–10. https://doi.org/10.1155/2015/729831

Rose, S. J., Neville, M. E., Gupta, R., & Bermudez, L. E. (2014). Delivery of Aerosolized Liposomal Amikacin as a Novel Approach for the Treatment of Nontuberculous Mycobacteria in an Experimental Model of Pulmonary Infection. PLoS ONE, 9(9), e108703. https://doi.org/10.1371/journal.pone.0108703

Goosen, W. J., Miller, M. A., Chegou, N. N., Cooper, D., Warren, R. M., van Helden, P. D., & Parsons, S. D. C. (2014). Agreement between assays of cell-mediated immunity utilizing Mycobacterium bovis-specific antigens for the diagnosis of tuberculosis in African buffaloes (Syncerus caffer). Veterinary Immunology and Immunopathology, 160(1–2), 133–138. https://doi.org/10.1016/j.vetimm.2014.03.015

Miller, M., Rosenthal, P., Beppu, A., Mueller, J. L., Hoffman, H. M., Tam, A. B., Doherty, T. A., McGeough, M. D., Pena, C. A., Suzukawa, M., Niwa, M., & Broide, D. H. (2014). ORMDL3 Transgenic Mice Have Increased Airway Remodeling and Airway Responsiveness Characteristic of Asthma. The Journal of Immunology, 192(8), 3475–3487. https://doi.org/10.4049/jimmunol.1303047

Bailey, K. L., Bonasera, S. J., Wilderdyke, M., Hanisch, B. W., Pavlik, J. A., DeVasure, J., Robinson, J. E., Sisson, J. H., & Wyatt, T. A. (2014). Aging causes a slowing in ciliary beat frequency, mediated by PKC. AJP: Lung Cellular and Molecular Physiology, 306(6), L584–L589. https://doi.org/10.1152/ajplung.00175.2013

Ivanov, S. S., & Roy, C. R. (2013). Pathogen signatures activate a ubiquitination pathway that modulates the function of the metabolic checkpoint kinase mTOR. Nature Immunology, 14(12), 1219–1228. https://doi.org/10.1038/ni.2740

Yamamoto, K., Ahyi, A.-N. N., Pepper-Cunningham, Z. A., Ferrari, J. D., Wilson, A. A., Jones, M. R., Quinton, L. J., & Mizgerd, J. P. (2013). Roles of Lung Epithelium in Neutrophil Recruitment During Pneumococcal Pneumonia. American Journal of Respiratory Cell and Molecular Biology, 130906140418002. https://doi.org/10.1165/rcmb.2013-0114OC

Lee, J., Brehm, M. A., Greiner, D., Shultz, L. D., & Kornfeld, H. (2013). Engrafted human cells generate adaptive immune responses to Mycobacterium bovis BCG infection in humanized mice. BMC Immunology, 14(1), 53. https://doi.org/10.1186/1471-2172-14-53

Booth, A. J., Hadley, R., Cornett, A. M., Dreffs, A. A., Matthes, S. A., Tsui, J. L., Weiss, K., Horowitz, J. C., Fiore, V. F., Barker, T. H., Moore, B. B., Martinez, F. J., Niklason, L. E., & White, E. S. (2012). Acellular Normal and Fibrotic Human Lung Matrices as a Culture System for In Vitro Investigation. American Journal of Respiratory and Critical Care Medicine, 186(9), 866–876. https://doi.org/10.1164/rccm.201204-0754OC

Hong, N., De-Xing, Q., Deng-Xiang, Z., & Long-Zhong, R. (2012). A Simple Cultural Method for Detection of Mycoplasma bovis. Journal of Animal and Veterinary Advances, 11(10), 1643–1646. https://doi.org/10.3923/javaa.2012.1643.1646

Sanderson, S. D., Thoman, M. L., Kis, K., Virts, E. L., Herrera, E. B., Widmann, S., Sepulveda, H., & Phillips, J. A. (2012). Innate Immune Induction and Influenza Protection Elicited by a Response-Selective Agonist of Human C5a. PLoS ONE, 7(7), e40303. https://doi.org/10.1371/journal.pone.0040303

Quinton, L. J., Mizgerd, J. P., Hilliard, K. L., Jones, M. R., Kwon, C. Y., & Allen, E. (2012). Leukemia Inhibitory Factor Signaling Is Required for Lung Protection during Pneumonia. The Journal of Immunology, 188(12), 6300–6308. https://doi.org/10.4049/jimmunol.1200256

El Agha, E., Al Alam, D., Carraro, G., MacKenzie, B., Goth, K., De Langhe, S. P., Voswinckel, R., Hajihosseini, M. K., Rehan, V. K., & Bellusci, S. (2012). Characterization of a Novel Fibroblast Growth Factor 10 (Fgf10) Knock-In Mouse Line to Target Mesenchymal Progenitors during Embryonic Development. PLoS ONE, 7(6), e38452. https://doi.org/10.1371/journal.pone.0038452

Konsavage, W. M., Zhang, L., Wu, Y., & Shenberger, J. S. (2012). Hyperoxia-induced activation of the integrated stress response in the newborn rat lung. AJP: Lung Cellular and Molecular Physiology, 302(1), L27–L35. https://doi.org/10.1152/ajplung.00174.2011

Ma, W., Han, W., Greer, P. A., Tuder, R. M., Toque, H. A., Wang, K. K. W., Caldwell, R. W., & Su, Y. (2011). Calpain mediates pulmonary vascular remodeling in rodent models of pulmonary hypertension, and its inhibition attenuates pathologic features of disease. Journal of Clinical Investigation, 121(11), 4548–4566. https://doi.org/10.1172/JCI57734

Alder, J. K., Guo, N., Kembou, F., Parry, E. M., Anderson, C. J., Gorgy, A. I., Walsh, M. F., Sussan, T., Biswal, S., Mitzner, W., Tuder, R. M., & Armanios, M. (2011). Telomere Length Is a Determinant of Emphysema Susceptibility. American Journal of Respiratory and Critical Care Medicine, 184(8), 904–912. https://doi.org/10.1164/rccm.201103-0520OC

Yamashita, C. M., Dolgonos, L., Zemans, R. L., Young, S. K., Robertson, J., Briones, N., Suzuki, T., Campbell, M. N., Gauldie, J., Radisky, D. C., Riches, D. W. H., Yu, G., Kaminski, N., McCulloch, C. A. G., & Downey, G. P. (2011). Matrix Metalloproteinase 3 Is a Mediator of Pulmonary Fibrosis. The American Journal of Pathology, 179(4), 1733–1745. https://doi.org/10.1016/j.ajpath.2011.06.041

Sivam, S., Sciurba, F. C., Lucht, L. A., Zhang, Y., Duncan, S. R., Norris, K. A., & Morris, A. (2011). Distribution of Pneumocystis jirovecii in lungs from colonized COPD patients. Diagnostic Microbiology and Infectious Disease, 71(1), 24–28. https://doi.org/10.1016/j.diagmicrobio.2011.05.008

Lymphatic tissue

Membranous tissue

Bonney, E. A., Krebs, K., Saade, G., Kechichian, T., Trivedi, J., Huaizhi, Y., & Menon, R. (2016). Differential senescence in feto-maternal tissues during mouse pregnancy. Placenta, 43, 26–34. https://doi.org/10.1016/j.placenta.2016.04.018

Menon, R., Behnia, F., Polettini, J., Saade, G. R., Campisi, J., & Velarde, M. (2016). Placental membrane aging and HMGB1 signaling associated with human parturition. Aging (Albany NY), 8(2), 216–229. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4789578/

Behnia, F., Parets, S. E., Kechichian, T., Yin, H., Dutta, E. H., Saade, G. R., Smith, A. K., & Menon, R. (2015). Fetal DNA methylation of autism spectrum disorders candidate genes: association with spontaneous preterm birth. American Journal of Obstetrics and Gynecology, 212(4), 533.e1-533.e9. https://doi.org/10.1016/j.ajog.2015.02.011

Bredeson, S., Papaconstantinou, J., Deford, J. H., Kechichian, T., Syed, T. A., Saade, G. R., & Menon, R. (2014). HMGB1 Promotes a p38MAPK Associated Non-Infectious Inflammatory Response Pathway in Human Fetal Membranes. PLoS ONE, 9(12), e113799. https://doi.org/10.1371/journal.pone.0113799

Menon, R., Polettini, J., Syed, T. A., Saade, G. R., & Boldogh, I. (2014). Expression of 8-oxoguanine Glycosylase in Human Fetal Membranes. American Journal of Reproductive Immunology, 72(1), 75–84. https://doi.org/10.1111/aji.12220

Menon, R., Boldogh, I., Hawkins, H. K., Woodson, M., Polettini, J., Syed, T. A., Fortunato, S. J., Saade, G. R., Papaconstantinou, J., & Taylor, R. N. (2014). Histological Evidence of Oxidative Stress and Premature Senescence in Preterm Premature Rupture of the Human Fetal Membranes Recapitulated in Vitro. The American Journal of Pathology, 184(6), 1740–1751. https://doi.org/10.1016/j.ajpath.2014.02.011

Polettini, J., Silva, M. G., Kacerovsky, M., Syed, T. A., Saade, G., & Menon, R. (2014). Expression profiles of fetal membrane nicotinamide adenine dinucleotide phosphate oxidases (NOX) 2 and 3 differentiates spontaneous preterm birth and pPROM pathophysiologies. Placenta, 35(3), 188–194. https://doi.org/10.1016/j.placenta.2013.12.012

Diaz-Campos, D. V. (2012). Molecular Epidemiology and Genetic Analysis of Staphylococcus species in Companion Animal Medicine. Auburn University.

Muscles, ligaments and tendons

Santos, A. C. C., Gatto, M., Mota, G. A. F., Borim, P. A., Silva, R. C. F., Meirelles, A. L. B., Souza, L. M., Ojopi, E. P. B., Rodrigues, E. A., Pagan, L. U., Marreiros, A. P. S., Brandao, G., Zornoff, L. A. M., Maranhão, R. C., Okoshi, K., & Okoshi, M. P. (2026). Effects of Early Treatment with Lipid Core Nanoparticles-Associated Methotrexate on Cardiac Remodeling and Soleus Muscle Inflammasomes in Infarcted Rats. International Journal of Molecular Sciences, 27(9), 4140. https://doi.org/10.3390/ijms27094140

Thompson, S. D., Pichika, R., Lieber, R. L., & Lavasani, M. (2024). Extracting High-Quality RNA From Formaldehyde-Fixed Naturally Aged Neuromusculoskeletal Tissues. BioTechniques, 76(4), 153–160. https://doi.org/10.2144/btn-2023-0092

Blackwood, S. J., Horwath, O., Moberg, M., Pontén, M., Apró, W., Ekblom, M. M., Larsen, F. J., & Katz, A. (2023). Insulin resistance after a 3-day fast is associated with an increased capacity of skeletal muscle to oxidize lipids. American Journal of Physiology-Endocrinology and Metabolism, 324(5), E390–E401. https://doi.org/10.1152/ajpendo.00317.2022

Choi, W., Lee, J., Lee, J., Lee, S. H., & Kim, S. (2019). Hepatocyte Growth Factor Regulates Macrophage Transition to the M2 Phenotype and Promotes Murine Skeletal Muscle Regeneration. Frontiers in Physiology, 10, 914. https://doi.org/10.3389/fphys.2019.00914

Sarasamma, S., Audira, G., Juniardi, S., Sampurna, B., Lai, Y.-H., Hao, E., Chen, J.-R., & Hsiao, C.-D. (2018). Evaluation of the Effects of Carbon 60 Nanoparticle Exposure to Adult Zebrafish: A Behavioral and Biochemical Approach to Elucidate the Mechanism of Toxicity. International Journal of Molecular Sciences, 19(12), 3853. https://doi.org/10.3390/ijms19123853

Iwata, M., Englund, D. A., Wen, Y., Dungan, C. M., Murach, K. A., Vechetti, I. J., Mobley, C. B., Peterson, C. A., & McCarthy, J. J. (2018). A novel tetracycline-responsive transgenic mouse strain for skeletal muscle-specific gene expression. Skeletal Muscle, 8(1), 33. https://doi.org/10.1186/s13395-018-0181-y

Kovanecz, I., Masouminia, M., Gelfand, R., Vernet, D., Rajfer, J., & Gonzalez-Cadavid, N. F. (2017). Myostatin, a profibrotic factor and the main inhibitor of striated muscle mass, is present in the penile and vascular smooth muscle. International Journal of Impotence Research, 29(5), 194–201. https://doi.org/10.1038/ijir.2017.22

Ohana, D., Dalebout, H., Marissen, R. J., Wulff, T., Bergquist, J., Deelder, A. M., & Palmblad, M. (2016). Identification of meat products by shotgun spectral matching. Food Chemistry, 203, 28–34. https://doi.org/10.1016/j.foodchem.2016.01.138

Metzger, D. C. H., Hemmer-Hansen, J., & Schulte, P. M. (2016). Conserved structure and expression of hsp70 paralogs in teleost fishes. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, 18, 10–20. https://doi.org/10.1016/j.cbd.2016.01.007

Bouley, R., Ding, D., Peng, Z., Bastian, M., Lastochkin, E., Song, W., Suckow, M. A., Schroeder, V. A., Wolter, W. R., Mobashery, S., & Chang, M. (2016). Structure–Activity Relationship for the 4(3H)-Quinazolinone Antibacterials. Journal of Medicinal Chemistry, 59(10), 5011–5021. https://doi.org/10.1021/acs.jmedchem.6b00372

Larsen, F. J., Schiffer, T. A., Ortenblad, N., Zinner, C., Morales-Alamo, D., Willis, S. J., Calbet, J. A., Holmberg, H.-C., & Boushel, R. (2015). High-intensity sprint training inhibits mitochondrial respiration through aconitase inactivation. The FASEB Journal. https://doi.org/10.1096/fj.15-276857

Frank, P., Andersson, E., Pontén, M., Ekblom, B., Ekblom, M., & Sahlin, K. (2015). Strength training improves muscle aerobic capacity and glucose tolerance in elderly: Strength training in elderly. Scandinavian Journal of Medicine & Science in Sports, n/a-n/a. https://doi.org/10.1111/sms.12537

An, C., Bhetwal, B. P., Sanders, K. M., Somlyo, A. V., & Perrino, B. A. (2015). Role of Telokin in Regulating Murine Gastric Fundus Smooth Muscle Tension. PLOS ONE, 10(8), e0134876. https://doi.org/10.1371/journal.pone.0134876

Psilander, N., Frank, P., Flockhart, M., & Sahlin, K. (2015). Adding strength to endurance training does not enhance aerobic capacity in cyclists: Concurrent training mitochondrial biogenesis. Scandinavian Journal of Medicine & Science in Sports, 25(4), e353–e359. https://doi.org/10.1111/sms.12338

Moore, C. D., Fahlman, A., Crocker, D. E., Robbins, K. A., & Trumble, S. J. (2015). The degradation of proteins in pinniped skeletal muscle: viability of post-mortem tissue in physiological research. Conservation Physiology, 3(1), cov019–cov019. https://doi.org/10.1093/conphys/cov019

Vechetti-Junior, I. J., Bertaglia, R. S., Fernandez, G. J., de Paula, T. G., de Souza, R. W. A., Moraes, L. N., Mareco, E. A., de Freitas, C. E. A., Aguiar, A. F., Carvalho, R. F., & Dal-Pai-Silva, M. (2015). Aerobic Exercise Recovers Disuse-induced Atrophy Through the Stimulus of the LRP130/PGC-1 Complex in Aged Rats. The Journals of Gerontology Series A: Biological Sciences and Medical Sciences. https://doi.org/10.1093/gerona/glv064

Lynch, C. J., Xu, Y., Hajnal, A., Salzberg, A. C., & Kawasawa, Y. I. (2015). RNA Sequencing Reveals a Slow to Fast Muscle Fiber Type Transition after Olanzapine Infusion in Rats. PLOS ONE, 10(4), e0123966. https://doi.org/10.1371/journal.pone.0123966

Tomechko, S. E., Liu, G., Tao, M., Schlatzer, D., Powell, C. T., Gupta, S., Chance, M. R., & Daneshgari, F. (2015). Tissue Specific Dysregulated Protein Subnetworks in Type 2 Diabetic Bladder Urothelium and Detrusor Muscle. Molecular & Cellular Proteomics, 14(3), 635–645. https://doi.org/10.1074/mcp.M114.041863

Piórkowska, K., Nowak, J., Połtowicz, K., Ropka-Molik, K., & Szmatoła, T. (2015). Effect of newly found polymorphisms in the promoter region of the CAPN1 gene on transcript abundance in broiler chicken breast muscle. Animal Science Papers and Reports, 33(3), 287–298.

Mathewson, M. A., Chambers, H. G., Girard, P. J., Tenenhaus, M., Schwartz, A. K., & Lieber, R. L. (2014). Stiff muscle fibers in calf muscles of patients with cerebral palsy lead to high passive muscle stiffness: CP CALF MUSCLE FIBER STIFFNESS. Journal of Orthopaedic Research, 32(12), 1667–1674. https://doi.org/10.1002/jor.22719

Mukund, K., Mathewson, M., Minamoto, V., Ward, S. R., Subramaniam, S., & Lieber, R. L. (2014). Systems analysis of transcriptional data provides insights into muscle’s biological response to botulinum toxin: Transcriptional Profiling after BoNT-A. Muscle & Nerve, 50(5), 744–758. https://doi.org/10.1002/mus.24211

Lashgari, M., & Lee, H. K. (2014). Determination of perfluorinated carboxylic acids in fish fillet by micro-solid phase extraction, followed by liquid chromatography–triple quadrupole mass spectrometry. Journal of Chromatography A, 1369, 26–32. https://doi.org/10.1016/j.chroma.2014.09.082

Moore, C. D., Crocker, D. E., Fahlman, A., Moore, M. J., Willoughby, D. S., Robbins, K. A., Kanatous, S. B., & Trumble, S. J. (2014). Ontogenetic changes in skeletal muscle fiber type, fiber diameter and myoglobin concentration in the Northern elephant seal (Mirounga angustirostris). Frontiers in Physiology, 5. https://doi.org/10.3389/fphys.2014.00217

Chamberlain, C. S., Leiferman, E. M., Frisch, K. E., Duenwald-Kuehl, S. E., Brickson, S. L., Murphy, W. L., Baer, G. S., & Vanderby, R. (2014). Interleukin-1 receptor antagonist modulates inflammation and scarring after ligament injury. Connective Tissue Research, 55(3), 177–186. https://doi.org/10.3109/03008207.2014.906408

King, I. N., Yartseva, V., Salas, D., Kumar, A., Heidersbach, A., Ando, D. M., Stallings, N. R., Elliott, J. L., Srivastava, D., & Ivey, K. N. (2014). The RNA-binding Protein TDP-43 Selectively Disrupts MicroRNA-1/206 Incorporation into the RNA-induced Silencing Complex. Journal of Biological Chemistry, 289(20), 14263–14271. https://doi.org/10.1074/jbc.M114.561902

Zhang, J., Pan, T., & Wang, J. H.-C. (2014). Cryotherapy suppresses tendon inflammation in an animal model. Journal of Orthopaedic Translation, 2(2), 75–81. https://doi.org/10.1016/j.jot.2014.01.001

Verhaart, I. E. C., van Vliet-van den Dool, L., Sipkens, J. A., de Kimpe, S. J., Kolfschoten, I. G. M., van Deutekom, J. C. T., Liefaard, L., Ridings, J. E., Hood, S. R., & Aartsma-Rus, A. (2014). The Dynamics of Compound, Transcript, and Protein Effects After Treatment With 2OMePS Antisense Oligonucleotides in mdx Mice. Molecular Therapy—Nucleic Acids, 3(2), e148. https://doi.org/10.1038/mtna.2014.1

Schuh, R. A., Jackson, K. C., Schlappal, A. E., Spangenburg, E. E., Ward, C. W., Park, J. H., Dugger, N., Shi, G., & Fishman, P. S. (2014). Mitochondrial oxygen consumption deficits in skeletal muscle isolated from an Alzheimer’s disease-relevant murine model. BMC Neuroscience, 15(1), 24. https://doi.org/10.1186/1471-2202-15-24

Chamberlain, C. S., Leiferman, E. M., Frisch, K. E., Brickson, S. L., Murphy, W. L., Baer, G. S., & Vanderby, R. (2013). Interleukin Expression after Injury and the Effects of Interleukin-1 Receptor Antagonist. PLoS ONE, 8(8), e71631. https://doi.org/10.1371/journal.pone.0071631

Brault, J. J., Pizzimenti, N. M., Dentel, J. N., & Wiseman, R. W. (2013). Selective inhibition of ATPase activity during contraction alters the activation of p38 MAP kinase isoforms in skeletal muscle. Journal of Cellular Biochemistry, 114(6), 1445–1455. https://doi.org/10.1002/jcb.24486

Song, J. S., Hwang, D. H., Kim, S.-O., Jeon, M., Choi, B.-J., Jung, H.-S., Moon, S. J., Park, W., & Choi, H.-J. (2013). Comparative Gene Expression Analysis of the Human Periodontal Ligament in Deciduous and Permanent Teeth. PLoS ONE, 8(4), e61231. https://doi.org/10.1371/journal.pone.0061231

Hanke, M. L., Heim, C. E., Angle, A., Sanderson, S. D., & Kielian, T. (2013). Targeting Macrophage Activation for the Prevention and Treatment of Staphylococcus aureus Biofilm Infections. The Journal of Immunology, 190(5), 2159–2168. https://doi.org/10.4049/jimmunol.1202348

Frank, P., Katz, A., Andersson, E., & Sahlin, K. (2013). Acute exercise reverses starvation-mediated insulin resistance in humans. AJP: Endocrinology and Metabolism, 304(4), E436–E443. https://doi.org/10.1152/ajpendo.00416.2012

Percival, J. M., Siegel, M. P., Knowels, G., & Marcinek, D. J. (2013). Defects in mitochondrial localization and ATP synthesis in the mdx mouse model of Duchenne muscular dystrophy are not alleviated by PDE5 inhibition. Human Molecular Genetics, 22(1), 153–167. https://doi.org/10.1093/hmg/dds415

Battaglia, G. M., Zheng, D., Hickner, R. C., & Houmard, J. A. (2012). Effect of exercise training on metabolic flexibility in response to a high-fat diet in obese individuals. AJP: Endocrinology and Metabolism, 303(12), E1440–E1445. https://doi.org/10.1152/ajpendo.00355.2012

Carreras, A., Kayali, F., Zhang, J., Hirotsu, C., Wang, Y., & Gozal, D. (2012). Metabolic effects of intermittent hypoxia in mice: steady versus high-frequency applied hypoxia daily during the rest period. AJP: Regulatory, Integrative and Comparative Physiology, 303(7), R700–R709. https://doi.org/10.1152/ajpregu.00258.2012

Siegel, M. P., Wilbur, T., Mathis, M., Shankland, E. G., Trieu, A., Harper, M.-E., & Marcinek, D. J. (2012). Impaired adaptability of in vivo mitochondrial energetics to acute oxidative insult in aged skeletal muscle. Mechanisms of Ageing and Development, 133(9–10), 620–628. https://doi.org/10.1016/j.mad.2012.08.002

Smith, L. R., Chambers, H. G., Subramaniam, S., & Lieber, R. L. (2012). Transcriptional Abnormalities of Hamstring Muscle Contractures in Children with Cerebral Palsy. PLoS ONE, 7(8), e40686. https://doi.org/10.1371/journal.pone.0040686

Tirrell, T. F., Cook, M. S., Carr, J. A., Lin, E., Ward, S. R., & Lieber, R. L. (2012). Human skeletal muscle biochemical diversity. Journal of Experimental Biology, 215(16), 2931–2931. https://doi.org/10.1242/jeb.077347

Yamada, E., Bastie, C. C., Koga, H., Wang, Y., Cuervo, A. M., & Pessin, J. E. (2012). Mouse Skeletal Muscle Fiber-Type-Specific Macroautophagy and Muscle Wasting Are Regulated by a Fyn/STAT3/Vps34 Signaling Pathway. Cell Reports, 1(5), 557–569. https://doi.org/10.1016/j.celrep.2012.03.014

MacMillan, H. A., Williams, C. M., Staples, J. F., & Sinclair, B. J. (2012). Metabolism and energy supply below the critical thermal minimum of a chill-susceptible insect. Journal of Experimental Biology, 215(8), 1366–1372. https://doi.org/10.1242/jeb.066381

Files, D. C., D’Alessio, F. R., Johnston, L. F., Kesari, P., Aggarwal, N. R., Garibaldi, B. T., Mock, J. R., Simmers, J. L., DeGorordo, A., Murdoch, J., Willis, M. S., Patterson, C., Tankersley, C. G., Messi, M. L., Liu, C., Delbono, O., Furlow, J. D., Bodine, S. C., Cohn, R. D., … Crow, M. T. (2012). A Critical Role for Muscle Ring Finger-1 in Acute Lung Injury–associated Skeletal Muscle Wasting. American Journal of Respiratory and Critical Care Medicine, 185(8), 825–834. https://doi.org/10.1164/rccm.201106-1150OC

Smith, K. M., Anthony, S. J., Switzer, W. M., Epstein, J. H., Seimon, T., Jia, H., Sanchez, M. D., Huynh, T. T., Galland, G. G., Shapiro, S. E., Sleeman, J. M., McAloose, D., Stuchin, M., Amato, G., Kolokotronis, S.-O., Lipkin, W. I., Karesh, W. B., Daszak, P., & Marano, N. (2012). Zoonotic Viruses Associated with Illegally Imported Wildlife Products. PLoS ONE, 7(1), e29505. https://doi.org/10.1371/journal.pone.0029505

Battaglia, G. M. (2012). Skeletal muscle metabolic flexibility impairments in response to lipid with obesity: effect of exercise training. East Carolina University.

Lancaster, K. Z., & Pfeiffer, J. K. (2011). Mechanisms Controlling Virulence Thresholds of Mixed Viral Populations. Journal of Virology, 85(19), 9778–9788. https://doi.org/10.1128/JVI.00355-11

Welle, S., Mehta, S., & Burgess, K. (2011). Effect of postdevelopmental myostatin depletion on myofibrillar protein metabolism. AJP: Endocrinology and Metabolism, 300(6), E993–E1001. https://doi.org/10.1152/ajpendo.00509.2010

Smith, L. R., Lee, K. S., Ward, S. R., Chambers, H. G., & Lieber, R. L. (2011). Hamstring contractures in children with spastic cerebral palsy result from a stiffer extracellular matrix and increased in vivo sarcomere length: Passive mechanical properties of muscle contracture. The Journal of Physiology, 589(10), 2625–2639. https://doi.org/10.1113/jphysiol.2010.203364

Foott, J. S., & Fogarty, R. (2011). Juvenile Stanislaus River Chinook salmon pathogen and physiology assessment: January – May 2011. U.S. Fish & Wildlife Service California – Nevada Fish Health Center, Anderson, CA. http://www.fws.gov/lodi/afrp/documents/STAN11%20REPORT%207-14%20final.pdf

Yamada, E., Pessin, J. E., Kurland, I. J., Schwartz, G. J., & Bastie, C. C. (2010). Fyn-Dependent Regulation of Energy Expenditure and Body Weight Is Mediated by Tyrosine Phosphorylation of LKB1. Cell Metabolism, 11(2), 113–124. https://doi.org/10.1016/j.cmet.2009.12.010

Riisager, M., Duno, M., Hansen, F. J., Krag, T. O., Vissing, C. R., & Vissing, J. (2013). A new mutation of the fukutin gene causing late-onset limb girdle muscular dystrophy. Neuromuscular Disorders, 23(7), 562–567. https://doi.org/10.1016/j.nmd.2013.04.006

Alves, R. D. A. M., Dane, A. D., Harms, A., Strassburg, K., Seifar, R. M., Verdijk, L. B., Kersten, S., Berger, R., Hankemeier, T., & Vreeken, R. J. (2015). Global profiling of the muscle metabolome: method optimization, validation and application to determine exercise-induced metabolic effects. Metabolomics, 11(2), 271–285. https://doi.org/10.1007/s11306-014-0701-7

Tuckey, N. P. L., Forgan, L. G., & Jerrett, A. R. (2012). Fillet colour correlates with biochemical status in Australasian snapper (Pagrus auratus) during storage in refrigerated seawater. Aquaculture, 356–357, 256–263. https://doi.org/10.1016/j.aquaculture.2012.05.008

Psilander, N. (2014). The effect of different exercise regimens on mitochondrial biogenesis and performance [Karolinska Instituet]. https://openarchive.ki.se/xmlui/bitstream/handle/10616/42310/Thesis_Niklas_Psilander.pdf?sequence=3

Saether, E. E., Chamberlain, C. S., Leiferman, E. M., Kondratko-Mittnacht, J. R., Li, W. J., Brickson, S. L., & Vanderby, R. (2014). Enhanced Medial Collateral Ligament Healing Using Mesenchymal Stem Cells: Dosage Effects on Cellular Response and Cytokine Profile. Stem Cell Reviews and Reports, 10(1), 86–96. https://doi.org/10.1007/s12015-013-9479-7

Oral tissues (including teeth)

Kim, S.-H., Kim, S., Shin, Y., Lee, H.-S., Jeon, M., Kim, S.-O., Cho, S.-W., Ruparel, N. B., & Song, J. S. (2016). Comparative Gene Expression Analysis of the Coronal Pulp and Apical Pulp Complex in Human Immature Teeth. Journal of Endodontics, 42(5), 752–759. https://doi.org/10.1016/j.joen.2016.01.024

Lee, H.-S., Jeon, M. J., Kim, S.-O., Kim, S.-H., Lee, J.-H., Ahn, S.-J., Shin, Y., & Song, J. S. (2015). Characteristics of stem cells from human exfoliated deciduous teeth (SHED) from intact cryopreserved deciduous teeth. Cryobiology, 71(3), 374–383. https://doi.org/10.1016/j.cryobiol.2015.10.146

Kim, J.-H., Jeon, M., Song, J.-S., Lee, J.-H., Choi, B.-J., Jung, H.-S., Moon, S. J., DenBesten, P. K., & Kim, S.-O. (2014). Distinctive Genetic Activity Pattern of the Human Dental Pulp between Deciduous and Permanent Teeth. PLoS ONE, 9(7), e102893. https://doi.org/10.1371/journal.pone.0102893

Kim, S., Song, J. S., Jeon, M., Shin, D. M., Kim, S.-O., & Lee, J. H. (2015). Ectopic Hard Tissue Formation by Odonto/Osteogenically In Vitro Differentiated Human Deciduous Teeth Pulp Stem Cells. Calcified Tissue International, 97(1), 80–89. https://doi.org/10.1007/s00223-015-9989-1

Kang, C.-M., Kim, H., Song, J. S., Choi, B.-J., Kim, S.-O., Jung, H.-S., Moon, S.-J., Choi, H.-J., Kang, C.-M., Kim, H., Song, J. S., Choi, B.-J., Kim, S.-O., Jung, H.-S., Moon, S.-J., & Choi, H.-J. (2016). Genetic Comparison of Stemness of Human Umbilical Cord and Dental Pulp, Genetic Comparison of Stemness of Human Umbilical Cord and Dental Pulp. Stem Cells International, Stem Cells International, 2016, 2016, e3453890. https://doi.org/10.1155/2016/3453890,%2010.1155/2016/3453890

Nasal tissues

Lee, M., Kim, D. W., Yoon, H., So, D., Khalmuratova, R., Rhee, C.-S., Park, J.-W., & Shin, H.-W. (2016). Sirtuin 1 attenuates nasal polypogenesis by suppressing epithelial-to-mesenchymal transition. Journal of Allergy and Clinical Immunology, 137(1), 87-98.e7. https://doi.org/10.1016/j.jaci.2015.07.026

Seshadri, S., Lu, X., Purkey, M. R., Homma, T., Choi, A. W., Carter, R., Suh, L., Norton, J., Harris, K. E., Conley, D. B., Kato, A., Avila, P. C., Czarnocka, B., Kopp, P. A., Peters, A. T., Grammer, L. C., Chandra, R. K., Tan, B. K., Liu, Z., … Schleimer, R. P. (2015). Increased expression of the epithelial anion transporter pendrin/SLC26A4 in nasal polyps of patients with chronic rhinosinusitis. Journal of Allergy and Clinical Immunology, 136(6), 1548-1558.e7. https://doi.org/10.1016/j.jaci.2015.05.024

Jia, Y., Yu, H., Fernandes, S. M., Wei, Y., Gonzalez-Gil, A., Motari, M. G., Vajn, K., Stevens, W. W., Peters, A. T., Bochner, B. S., Kern, R. C., Schleimer, R. P., & Schnaar, R. L. (2015). Expression of ligands for Siglec-8 and Siglec-9 in human airways and airway cells. Journal of Allergy and Clinical Immunology, 135(3), 799-810.e7. https://doi.org/10.1016/j.jaci.2015.01.004

Hu, J., Sheng, L., Li, L., Zhou, X., Xie, F., D’Agostino, J., Li, Y., & Ding, X. (2013). Essential Role of the Cytochrome P450 Enzyme CYP2A5 in Olfactory Mucosal Toxicity of Naphthalene. Drug Metabolism and Disposition, 42(1), 23–27. https://doi.org/10.1124/dmd.113.054429

Takabayashi, T., Kato, A., Peters, A. T., Hulse, K. E., Suh, L. A., Carter, R., Norton, J., Grammer, L. C., Tan, B. K., Chandra, R. K., Conley, D. B., Kern, R. C., Fujieda, S., & Schleimer, R. P. (2013). Increased expression of factor XIII-A in patients with chronic rhinosinusitis with nasal polyps. Journal of Allergy and Clinical Immunology, 132(3), 584-592.e4. https://doi.org/10.1016/j.jaci.2013.02.003

Nagarkar, D. R., Poposki, J. A., Tan, B. K., Comeau, M. R., Peters, A. T., Hulse, K. E., Suh, L. A., Norton, J., Harris, K. E., Grammer, L. C., Chandra, R. K., Conley, D. B., Kern, R. C., Schleimer, R. P., & Kato, A. (2013). Thymic stromal lymphopoietin activity is increased in nasal polyps of patients with chronic rhinosinusitis. Journal of Allergy and Clinical Immunology, 132(3), 593-600.e12. https://doi.org/10.1016/j.jaci.2013.04.005

Xie, F., D’Agostino, J., Zhou, X., & Ding, X. (2013). Bioactivation of the Nasal Toxicant 2,6-Dichlorobenzonitrile: An Assessment of Metabolic Activity in Human Nasal Mucosa and Identification of Indicators of Exposure and Potential Toxicity. Chemical Research in Toxicology, 26(3), 388–398. https://doi.org/10.1021/tx300479w

Xie, F., Zhou, X., Genter, M. B., Behr, M., Gu, J., & Ding, X. (2011). The Tissue-Specific Toxicity of Methimazole in the Mouse Olfactory Mucosa Is Partly Mediated through Target-Tissue Metabolic Activation by CYP2A5. Drug Metabolism and Disposition, 39(6), 947–951. https://doi.org/10.1124/dmd.110.037895

Xie, F., Zhou, X., Behr, M., Fang, C., Horii, Y., Gu, J., Kannan, K., & Ding, X. (2010). Mechanisms of olfactory toxicity of the herbicide 2,6-dichlorobenzonitrile: Essential roles of CYP2A5 and target-tissue metabolic activation. Toxicology and Applied Pharmacology, 249(1), 101–106. https://doi.org/10.1016/j.taap.2010.09.003

Takabayashi, T., Kato, A., Peters, A. T., Suh, L. A., Carter, R., Norton, J., Grammer, L. C., Tan, B. K., Chandra, R. K., Conley, D. B., Kern, R. C., Fujieda, S., & Schleimer, R. P. (2012). Glandular mast cells with distinct phenotype are highly elevated in chronic rhinosinusitis with nasal polyps. Journal of Allergy and Clinical Immunology, 130(2), 410-420.e5. https://doi.org/10.1016/j.jaci.2012.02.046

Poposki, J. A., Uzzaman, A., Nagarkar, D. R., Chustz, R. T., Peters, A. T., Suh, L. A., Carter, R., Norton, J., Harris, K. E., Grammer, L. C., Tan, B. K., Chandra, R. K., Conley, D. B., Kern, R. C., Schleimer, R. P., & Kato, A. (2011). Increased expression of the chemokine CCL23 in eosinophilic chronic rhinosinusitis with nasal polyps. Journal of Allergy and Clinical Immunology, 128(1), 73-81.e4. https://doi.org/10.1016/j.jaci.2011.03.017

Reproductive organs and tissues

Sinzato, Y. K., Paula, V. G., Gallego, F. Q., Moraes-Souza, R. Q., Corrente, J. E., Volpato, G. T., & Damasceno, D. C. (2022). Maternal Diabetes and Postnatal High-Fat Diet on Pregnant Offspring. Frontiers in Cell and Developmental Biology, 10, 818621. https://doi.org/10.3389/fcell.2022.818621

Vincent, R. N., Gooding, L. D., Louie, K., Chan Wong, E., & Ma, S. (2016). Altered DNA methylation and expression of PLAGL1 in cord blood from assisted reproductive technology pregnancies compared with natural conceptions. Fertility and Sterility. https://doi.org/10.1016/j.fertnstert.2016.04.036

Alqaisi, K. M., Lamare, M. D., Grattan, D. R., Damsteegt, E. L., Schneider, W. J., & Lokman, P. M. (2016). A comparative study of vitellogenesis in Echinodermata: Lessons from the sea star. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 198, 72–86. https://doi.org/10.1016/j.cbpa.2016.04.013

Rubinchik-Stern, M., Shmuel, M., Bar, J., Eyal, S., & Kovo, M. (2016). Maternal–fetal transfer of indocyanine green across the perfused human placenta. Reproductive Toxicology, 62, 100–105. https://doi.org/10.1016/j.reprotox.2016.04.017

Jansson, E., Mattsson, A., Goldstone, J., & Berg, C. (2016). Sex-dependent expression of anti-Müllerian hormone (amh) and amh receptor 2 during sex organ differentiation and characterization of the Müllerian duct development in Xenopus tropicalis. General and Comparative Endocrinology, 229, 132–144. https://doi.org/10.1016/j.ygcen.2016.03.018

Rosner, J. Y., Gupta, M., McGill, M., Xue, X., Chatterjee, P. K., Yoshida-Hay, M., Robeson, W., & Metz, C. N. (2016). Magnesium deficiency during pregnancy in mice impairs placental size and function. Placenta, 39, 87–93. https://doi.org/10.1016/j.placenta.2016.01.009

Pande, V. V., Devon, R. L., Sharma, P., McWhorter, A. R., & Chousalkar, K. K. (2016). Study of Salmonella Typhimurium Infection in Laying Hens. Frontiers in Microbiology, 7. https://doi.org/10.3389/fmicb.2016.00203

Jones, J. T., Jones, M., Jones, B., Sulaiman, K., Plate, C., & Lewis, D. (2015). Detection of Codeine, Morphine, 6-Monoacetylmorphine, and Meconin in Human Umbilical Cord Tissue: Method Validation and Evidence of In Utero Heroin Exposure. Therapeutic Drug Monitoring, 37(1), 45–52. https://doi.org/10.1097/FTD.0000000000000104

Quach, K., Grover, S. A., Kenigsberg, S., & Librach, C. L. (2014). A combination of single nucleotide polymorphisms in the 3′untranslated region of HLA-G is associated with preeclampsia. Human Immunology, 75(12), 1163–1170. https://doi.org/10.1016/j.humimm.2014.10.009

Schneider, A., Zhi, X., Moreira, F., Lucia, T., Mondadori, R. G., & Masternak, M. M. (2014). Primordial follicle activation in the ovary of Ames dwarf mice. Journal of Ovarian Research, 7(1). https://doi.org/10.1186/s13048-014-0120-4

Makowski, L., Zhou, C., Zhong, Y., Kuan, P. F., Fan, C., Sampey, B. P., Difurio, M., & Bae-Jump, V. L. (2014). Obesity increases tumor aggressiveness in a genetically engineered mouse model of serous ovarian cancer. Gynecologic Oncology, 133(1), 90–97. https://doi.org/10.1016/j.ygyno.2013.12.026

Ramos, P., Karnezis, A. N., Craig, D. W., Sekulic, A., Russell, M. L., Hendricks, W. P. D., Corneveaux, J. J., Barrett, M. T., Shumansky, K., Yang, Y., Shah, S. P., Prentice, L. M., Marra, M. A., Kiefer, J., Zismann, V. L., McEachron, T. A., Salhia, B., Prat, J., D’Angelo, E., … Trent, J. M. (2014). Small cell carcinoma of the ovary, hypercalcemic type, displays frequent inactivating germline and somatic mutations in SMARCA4. Nature Genetics, 46(5), 427–429. https://doi.org/10.1038/ng.2928

Saad, A. F., Kechichian, T., Yin, H., Sbrana, E., Longo, M., Wen, M., Tamayo, E., Hankins, G. D. V., Saade, G. R., & Costantine, M. M. (2014). Effects of Pravastatin on Angiogenic and Placental Hypoxic Imbalance in a Mouse Model of Preeclampsia. Reproductive Sciences, 21(1), 138–145. https://doi.org/10.1177/1933719113492207

Subramaniam, K., Wong, M., Woo, Y., Mat Adenan, N., Mohamed, Z., & Chung, I. (2013). PRELIMINARY STUDY ON THE OCCURRENCE OF PTEN AND PIK3CA GENE MUTATIONS IN ENDOMETRIAL CANCER AMONG MALAYSIAN WOMEN. JUMMEC, 16(1). http://e-journal.um.edu.my/filebank/published_article/5927/13-01%28final2%29.pdf

Jones, J., Jones, M., Plate, C., & Lewis, D. (2012). The Detection of 1-Palmitoyl-2-oleoyl-&lt;i&gt;sn&lt;/i&gt;-glycero-3-phosphoethanol and Ethyl Glucuronide in Human Umbilical Cord. American Journal of Analytical Chemistry, 03(12), 800–810. https://doi.org/10.4236/ajac.2012.312106

Marin, S. J., Christensen, R. D., Baer, V. L., Clark, C. J., & McMillin, G. A. (2011). Nicotine and Metabolites in Paired Umbilical Cord Tissue and Meconium Specimens: Therapeutic Drug Monitoring, 33(1), 80–85. https://doi.org/10.1097/FTD.0b013e3182055f14

Alt, C., Harrison, T., Dousman, L., Fujita, N., Shew, K., Tran, T.-T., Shayesteh, S., Matsukawa, A., Mirsalis, J., & D’Andrea, A. (2009). Increased CCL2 expression and macrophage/monocyte migration during microbicide-induced vaginal irritation. Current HIV Research, 7(6), 639–649.

Schneider, A., Zhi, X., Bartke, A., Kopchick, J. J., & Masternak, M. M. (2014). Effect of growth hormone receptor gene disruption and PMA treatment on the expression of genes involved in primordial follicle activation in mice ovaries. AGE, 36(4). https://doi.org/10.1007/s11357-014-9701-9

Kovanecz, I., Gelfand, R., Masouminia, M., Gharib, S., Segura, D., Vernet, D., Rajfer, J., Li, D. K., Kannan, K., & Gonzalez-Cadavid, N. F. (2014). Oral Bisphenol A (BPA) given to rats at moderate doses is associated with erectile dysfunction, cavernosal lipofibrosis and alterations of global gene transcription. International Journal of Impotence Research, 26(2), 67–75. https://doi.org/10.1038/ijir.2013.37

Rodriguez-Deliz, C., Monteiro, J., Cruz-Cosme, R., & Flores, I. (n.d.). H4K20me3 and H3K79me3 epigenetic changes in Endometriosis and endometrial tissues (LB844). The FASEB Journal. https://doi.org/10.1096/fj.1530-6860

Haglock-Adler, C. J., McMillin, G. A., & Strathmann, F. G. (n.d.). Development of a liquid chromatography–tandem mass spectrometry method to address the increased utilization of umbilical cord in the assessment of in utero drug exposure. Clinical Biochemistry. https://doi.org/10.1016/j.clinbiochem.2016.04.007

Tumors and other pathological tissues

Masterson, L., Winder, D. M., Ball, S. L. R., Vaughan, K., Lehmann, M., Scholtz, L.-U., Sterling, J. C., Sudhoff, H. H., & Goon, P. K. C. (2016). Molecular analyses of unselected head and neck cancer cases demonstrates that human papillomavirus transcriptional activity is positively associated with survival and prognosis. BMC Cancer, 16, 367. https://doi.org/10.1186/s12885-016-2398-7

Byun, S., Shin, S. H., Lee, E., Lee, J., Lee, S.-Y., Farrand, L., Jung, S. K., Cho, Y.-Y., Um, S.-J., Sin, H.-S., Kwon, Y.-J., Zhang, C., Tsang, B. K., Bode, A. M., Lee, H. J., Lee, K. W., & Dong, Z. (2015). The retinoic acid derivative, ABPN, inhibits pancreatic cancer through induction of Nrdp1. Carcinogenesis, bgv148. https://doi.org/10.1093/carcin/bgv148

Jallouk, A. P., Palekar, R. U., Marsh, J. N., Pan, H., Pham, C. T. N., Schlesinger, P. H., & Wickline, S. A. (2015). Delivery of a Protease-Activated Cytolytic Peptide Prodrug by Perfluorocarbon Nanoparticles. Bioconjugate Chemistry, 26(8), 1640–1650. https://doi.org/10.1021/acs.bioconjchem.5b00246

Allensworth, J. L., Evans, M. K., Bertucci, F., Aldrich, A. J., Festa, R. A., Finetti, P., Ueno, N. T., Safi, R., McDonnell, D. P., Thiele, D. J., Van Laere, S., & Devi, G. R. (2015). Disulfiram (DSF) acts as a copper ionophore to induce copper-dependent oxidative stress and mediate anti-tumor efficacy in inflammatory breast cancer. Molecular Oncology, 9(6), 1155–1168. https://doi.org/10.1016/j.molonc.2015.02.007

Awasthi, N., Hinz, S., Brekken, R. A., Schwarz, M. A., & Schwarz, R. E. (2015). Nintedanib, a triple angiokinase inhibitor, enhances cytotoxic therapy response in pancreatic cancer. Cancer Letters, 358(1), 59–66. https://doi.org/10.1016/j.canlet.2014.12.027

Adelaiye, R., Ciamporcero, E., Miles, K. M., Sotomayor, P., Bard, J., Tsompana, M., Conroy, D., Shen, L., Ramakrishnan, S., Ku, S.-Y., Orillion, A., Prey, J., Fetterly, G., Buck, M., Chintala, S., Bjarnason, G. A., & Pili, R. (2015). Sunitinib Dose Escalation Overcomes Transient Resistance in Clear Cell Renal Cell Carcinoma and Is Associated with Epigenetic Modifications. Molecular Cancer Therapeutics, 14(2), 513–522. https://doi.org/10.1158/1535-7163.MCT-14-0208

Valentino, J. D., Li, J., Zaytseva, Y. Y., Mustain, W. C., Elliott, V. A., Kim, J. T., Harris, J. W., Campbell, K., Weiss, H., Wang, C., Song, J., Anthony, L., Townsend, C. M., & Evers, B. M. (2014). Cotargeting the PI3K and RAS Pathways for the Treatment of Neuroendocrine Tumors. Clinical Cancer Research, 20(5), 1212–1222. https://doi.org/10.1158/1078-0432.CCR-13-1897

Liang, W. S., Aldrich, J., Tembe, W., Kurdoglu, A., Cherni, I., Phillips, L., Reiman, R., Baker, A., Weiss, G. J., Carpten, J. D., & Craig, D. W. (2014). Long insert whole genome sequencing for copy number variant and translocation detection. Nucleic Acids Research, 42(2), e8–e8. https://doi.org/10.1093/nar/gkt865

Shanmugam, V., Ramanathan, R. K., Lavender, N. A., Sinari, S., Chadha, M., Liang, W. S., Kurdoglu, A., Izatt, T., Christoforides, A., Benson, H., Phillips, L., Baker, A., Murray, C., Hostetter, G., Von Hoff, D. D., Craig, D. W., & Carpten, J. D. (2014). Whole genome sequencing reveals potential targets for therapy in patients with refractory KRAS mutated metastatic colorectal cancer. BMC Medical Genomics, 7(1), 36. https://doi.org/10.1186/1755-8794-7-36

Goh, J., Tsai, J., Bammler, T. K., Farin, F. M., Endicott, E., & Ladiges, W. C. (2013). Exercise Training in Transgenic Mice Is Associated with Attenuation of Early Breast Cancer Growth in a Dose-Dependent Manner. PLoS ONE, 8(11), e80123. https://doi.org/10.1371/journal.pone.0080123

Scrimieri, F., Askew, D., Corn, D. J., Eid, S., Bobanga, I. D., Bjelac, J. A., Tsao, M. L., Allen, F., Othman, Y. S., Wang, S.-C. G., & Huang, A. Y. (2013). Murine leukemia virus envelope gp70 is a shared biomarker for the high-sensitivity quantification of murine tumor burden. OncoImmunology, 2(11), e26889. https://doi.org/10.4161/onci.26889

Travica, S., Pors, K., Loadman, P. M., Shnyder, S. D., Johansson, I., Alandas, M. N., Sheldrake, H. M., Mkrtchian, S., Patterson, L. H., & Ingelman-Sundberg, M. (2013). Colon Cancer-Specific Cytochrome P450 2W1 Converts Duocarmycin Analogues into Potent Tumor Cytotoxins. Clinical Cancer Research, 19(11), 2952–2961. https://doi.org/10.1158/1078-0432.CCR-13-0238

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