Bullet Blender Publications: Large Animal Tissue - Next Advance

Publications that involve processing tissue from large animals, including humans.

Cat

Borschensky, C. M., & Reinacher, M. (2014). Mutations in the 3c and 7b genes of feline coronavirus in spontaneously affected FIP cats. Research in Veterinary Science, 97(2), 333–340. https://doi.org/10.1016/j.rvsc.2014.07.016

Cattle

Ohana, D., Dalebout, H., Marissen, R. J., Wulff, T., Bergquist, J., Deelder, A. M., & Palmblad, M. (2016). Identification of meat products by shotgun spectral matching. Food Chemistry, 203, 28–34. https://doi.org/10.1016/j.foodchem.2016.01.138

Palomares, R. A., Sakamoto, K., Walz, H. L., Brock, K. V., & Hurley, D. J. (2015). Acute infection with bovine viral diarrhea virus of low or high virulence leads to depletion and redistribution of WC1+ γδ T cells in lymphoid tissues of beef calves. Veterinary Immunology and Immunopathology, 167(3–4), 190–195. https://doi.org/10.1016/j.vetimm.2015.07.016

Everman, J. L., Eckstein, T. M., Roussey, J., Coussens, P., Bannantine, J. P., & Bermudez, L. E. (2015). Characterization of the inflammatory phenotype of Mycobacterium avium subspecies paratuberculosis using a novel cell culture passage model. Microbiology, 161(7), 1420–1434. https://doi.org/10.1099/mic.0.000106

Palomares, R. A., Parrish, J., Woolums, A. R., Brock, K. V., & Hurley, D. J. (2014). Expression of toll-like receptors and co-stimulatory molecules in lymphoid tissue during experimental infection of beef calves with bovine viral diarrhea virus of low and high virulence. Veterinary Research Communications, 38(4), 329–335. https://doi.org/10.1007/s11259-014-9613-2

Palomares, R. A., Hurley, D. J., Woolums, A. R., Parrish, J. E., & Brock, K. V. (2014). Analysis of mRNA expression for genes associated with regulatory T lymphocytes (CD25, FoxP3, CTLA4, and IDO) after experimental infection with bovine viral diarrhea virus of low or high virulence in beef calves. Comparative Immunology, Microbiology and Infectious Diseases, 37(5–6), 331–338. https://doi.org/10.1016/j.cimid.2014.10.001

Krull, A. C., Shearer, J. K., Gorden, P. J., Cooper, V. L., Phillips, G. J., & Plummer, P. J. (2014). Deep Sequencing Analysis Reveals Temporal Microbiota Changes Associated with Development of Bovine Digital Dermatitis. Infection and Immunity, 82(8), 3359–3373. https://doi.org/10.1128/IAI.02077-14

Palomares, R. A., Brock, K. V., & Walz, P. H. (2014). Differential expression of pro-inflammatory and anti-inflammatory cytokines during experimental infection with low or high virulence bovine viral diarrhea virus in beef calves. Veterinary Immunology and Immunopathology, 157(3–4), 149–154. https://doi.org/10.1016/j.vetimm.2013.12.002

Volk, H., Piskernik, S., Kurinčič, M., Klančnik, A., Toplak, N., & Jeršek, B. (2014). Evaluation of different methods for DNA extraction from milk. Jounal of Food and Nutrition Research, 53(2), 97–104.

Hong, N., De-Xing, Q., Deng-Xiang, Z., & Long-Zhong, R. (2012). A Simple Cultural Method for Detection of Mycoplasma bovis. Journal of Animal and Veterinary Advances, 11(10), 1643–1646. https://doi.org/10.3923/javaa.2012.1643.1646

Palomares, R. A., Walz, H. G., & Brock, K. V. (2013). Expression of type I interferon-induced antiviral state and pro-apoptosis markers during experimental infection with low or high virulence bovine viral diarrhea virus in beef calves. Virus Research, 173(2), 260–269. https://doi.org/10.1016/j.virusres.2013.02.010

Deer

Hoover, C. E., Davenport, K. A., Henderson, D. M., Pulscher, L. A., Mathiason, C. K., Zabel, M. D., & Hoover, E. A. (2016). Detection and Quantification of CWD Prions in Fixed Paraffin Embedded Tissues by Real-Time Quaking-Induced Conversion. Scientific Reports, 6. https://doi.org/10.1038/srep25098

Elder, A. M., Henderson, D. M., Nalls, A. V., Wilham, J. M., Caughey, B. W., Hoover, E. A., Kincaid, A. E., Bartz, J. C., & Mathiason, C. K. (2013). In Vitro Detection of prionemia in TSE-Infected Cervids and Hamsters. PLoS ONE, 8(11), e80203. https://doi.org/10.1371/journal.pone.0080203

Nichols, T. A., Spraker, T. R., Rigg, T. D., Meyerett-Reid, C., Hoover, C., Michel, B., Bian, J., Hoover, E., Gidlewski, T., Balachandran, A., O’Rourke, K., Telling, G. C., Bowen, R., Zabel, M. D., & VerCauteren, K. C. (2013). Intranasal Inoculation of White-Tailed Deer (Odocoileus virginianus) with Lyophilized Chronic Wasting Disease Prion Particulate Complexed to Montmorillonite Clay. PLoS ONE, 8(5), e62455. https://doi.org/10.1371/journal.pone.0062455

Dog

Khademi, S., Frye, M. A., Jeckel, K. M., Schroeder, T., Monnet, E., Irwin, D. C., Cole, P. A., Bell, C., Miller, B. F., & Hamilton, K. L. (2015). Hypoxia mediated pulmonary edema: potential influence of oxidative stress, sympathetic activation and cerebral blood flow. BMC Physiology, 15(1). https://doi.org/10.1186/s12899-015-0018-4

Dolphin

Rubio-Guerri, C., Melero, M., Esperón, F., Bellière, E., Arbelo, M., Crespo, J., Sierra, E., García-Párraga, D., & Sánchez-Vizcaíno, J. (2013). Unusual striped dolphin mass mortality episode related to cetacean morbillivirus in the Spanish Mediterranean sea. BMC Veterinary Research, 9(1), 106. https://doi.org/10.1186/1746-6148-9-106

Human

Frostadottir, D., Welinder, C., Perez, R., & Dahlin, L. B. (2025). Refinement of Protein Extraction Protocols for Human Peripheral Nerve Tissue. ACS Omega, 10(5), 5111–5118. https://doi.org/10.1021/acsomega.4c11373

Blackwood, S. J., Horwath, O., Moberg, M., Pontén, M., Apró, W., Ekblom, M. M., Larsen, F. J., & Katz, A. (2023). Insulin resistance after a 3-day fast is associated with an increased capacity of skeletal muscle to oxidize lipids. American Journal of Physiology-Endocrinology and Metabolism, 324(5), E390–E401. https://doi.org/10.1152/ajpendo.00317.2022

Lim, M. Y., Hong, S., Kim, B.-M., Ahn, Y., Kim, H.-J., & Nam, Y.-D. (2020). Changes in microbiome and metabolomic profiles of fecal samples stored with stabilizing solution at room temperature: a pilot study. Scientific Reports, 10(1), 1789. https://doi.org/10.1038/s41598-020-58719-8

Gallart-Palau, X., Guo, X., Serra, A., & Sze, S. K. (2020). Alzheimer’s disease progression characterized by alterations in the molecular profiles and biogenesis of brain extracellular vesicles. Alzheimer’s Research & Therapy, 12(1), 54. https://doi.org/10.1186/s13195-020-00623-4

Mahinrad, S., Bulk, M., van der Velpen, I., Mahfouz, A., van Roon-Mom, W., Fedarko, N., Yasar, S., Sabayan, B., van Heemst, D., & van der Weerd, L. (2018). Natriuretic Peptides in Post-mortem Brain Tissue and Cerebrospinal Fluid of Non-demented Humans and Alzheimer’s Disease Patients. Frontiers in Neuroscience, 12, 864. https://doi.org/10.3389/fnins.2018.00864

Vincent, R. N., Gooding, L. D., Louie, K., Chan Wong, E., & Ma, S. (2016). Altered DNA methylation and expression of PLAGL1 in cord blood from assisted reproductive technology pregnancies compared with natural conceptions. Fertility and Sterility. https://doi.org/10.1016/j.fertnstert.2016.04.036

Murray, H. C., Low, V. F., Swanson, M. E. V., Dieriks, B. V., Turner, C., Faull, R. L. M., & Curtis, M. A. (2016). Distribution of PSA-NCAM in normal, Alzheimer’s and Parkinson’s disease human brain. Neuroscience, 330, 359–375. https://doi.org/10.1016/j.neuroscience.2016.06.003

Rubinchik-Stern, M., Shmuel, M., Bar, J., Eyal, S., & Kovo, M. (2016). Maternal–fetal transfer of indocyanine green across the perfused human placenta. Reproductive Toxicology, 62, 100–105. https://doi.org/10.1016/j.reprotox.2016.04.017

Molina, A. J. A., Bharadwaj, M. S., Van Horn, C., Nicklas, B. J., Lyles, M. F., Eggebeen, J., Haykowsky, M. J., Brubaker, P. H., & Kitzman, D. W. (2016). Skeletal Muscle Mitochondrial Content, Oxidative Capacity, and Mfn2 Expression Are Reduced in Older Patients With Heart Failure and Preserved Ejection Fraction and Are Related to Exercise Intolerance. JACC: Heart Failure. https://doi.org/10.1016/j.jchf.2016.03.011

Kim, S.-H., Kim, S., Shin, Y., Lee, H.-S., Jeon, M., Kim, S.-O., Cho, S.-W., Ruparel, N. B., & Song, J. S. (2016). Comparative Gene Expression Analysis of the Coronal Pulp and Apical Pulp Complex in Human Immature Teeth. Journal of Endodontics, 42(5), 752–759. https://doi.org/10.1016/j.joen.2016.01.024

Bennike, T. B., Kastaniegaard, K., Padurariu, S., Gaihede, M., Birkelund, S., Andersen, V., & Stensballe, A. (2016). Comparing the proteome of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human tissue samples. EuPA Open Proteomics, 10, 9–18. https://doi.org/10.1016/j.euprot.2015.10.001

Bennike, T. B., Kastaniegaard, K., Padurariu, S., Gaihede, M., Birkelund, S., Andersen, V., & Stensballe, A. (2016). Proteome stability analysis of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human colon mucosal biopsies. Data in Brief, 6, 942–947. https://doi.org/10.1016/j.dib.2016.01.061

Menon, R., Behnia, F., Polettini, J., Saade, G. R., Campisi, J., & Velarde, M. (2016). Placental membrane aging and HMGB1 signaling associated with human parturition. Aging (Albany NY), 8(2), 216–229. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4789578/

Marin, S. J., & McMillin, G. A. (2016). Quantitation of Total Buprenorphine and Norbuprenorphine in Meconium by LC-MS/MS. In Clinical Applications of Mass Spectrometry in Drug Analysis: Methods and Protocols (Vol. 1383, pp. 59–68). Springer Science+Business Media.

Lee, M., Kim, D. W., Yoon, H., So, D., Khalmuratova, R., Rhee, C.-S., Park, J.-W., & Shin, H.-W. (2016). Sirtuin 1 attenuates nasal polypogenesis by suppressing epithelial-to-mesenchymal transition. Journal of Allergy and Clinical Immunology, 137(1), 87-98.e7. https://doi.org/10.1016/j.jaci.2015.07.026

Park, W. C., Kim, H.-R., Kang, D. B., Ryu, J.-S., Choi, K.-H., Lee, G.-O., Yun, K. J., Kim, K. Y., Park, R., Yoon, K.-H., Cho, J.-H., Lee, Y.-J., Chae, S.-C., Park, M.-C., & Park, D.-S. (2016). Comparative expression patterns and diagnostic efficacies of SR splicing factors and HNRNPA1 in gastric and colorectal cancer. BMC Cancer, 16, 358. https://doi.org/10.1186/s12885-016-2387-x

Masterson, L., Winder, D. M., Ball, S. L. R., Vaughan, K., Lehmann, M., Scholtz, L.-U., Sterling, J. C., Sudhoff, H. H., & Goon, P. K. C. (2016). Molecular analyses of unselected head and neck cancer cases demonstrates that human papillomavirus transcriptional activity is positively associated with survival and prognosis. BMC Cancer, 16, 367. https://doi.org/10.1186/s12885-016-2398-7

Gallart-Palau, X., Lee, B. S. T., Adav, S. S., Qian, J., Serra, A., Park, J. E., Lai, M. K. P., Chen, C. P., Kalaria, R. N., & Sze, S. K. (2016). Gender differences in white matter pathology and mitochondrial dysfunction in Alzheimer’s disease with cerebrovascular disease. Molecular Brain, 9, 27. https://doi.org/10.1186/s13041-016-0205-7

Gallart-Palau, X., Serra, A., & Sze, S. K. (2016). Enrichment of extracellular vesicles from tissues of the central nervous system by PROSPR. Molecular Neurodegeneration, 11, 41. https://doi.org/10.1186/s13024-016-0108-1

Tristán-Noguero, A., Díez, H., Jou, C., Pineda, M., Ormazábal, A., Sánchez, A., Artuch, R., & Garcia-Cazorla, À. (2015). Study of a fetal brain affected by a severe form of tyrosine hydroxylase deficiency, a rare cause of early parkinsonism. Metabolic Brain Disease. https://doi.org/10.1007/s11011-015-9780-z

Seshadri, S., Lu, X., Purkey, M. R., Homma, T., Choi, A. W., Carter, R., Suh, L., Norton, J., Harris, K. E., Conley, D. B., Kato, A., Avila, P. C., Czarnocka, B., Kopp, P. A., Peters, A. T., Grammer, L. C., Chandra, R. K., Tan, B. K., Liu, Z., … Schleimer, R. P. (2015). Increased expression of the epithelial anion transporter pendrin/SLC26A4 in nasal polyps of patients with chronic rhinosinusitis. Journal of Allergy and Clinical Immunology, 136(6), 1548-1558.e7. https://doi.org/10.1016/j.jaci.2015.05.024

Lee, H.-S., Jeon, M. J., Kim, S.-O., Kim, S.-H., Lee, J.-H., Ahn, S.-J., Shin, Y., & Song, J. S. (2015). Characteristics of stem cells from human exfoliated deciduous teeth (SHED) from intact cryopreserved deciduous teeth. Cryobiology, 71(3), 374–383. https://doi.org/10.1016/j.cryobiol.2015.10.146

Evers, M. M., Schut, M. H., Pepers, B. A., Atalar, M., van Belzen, M. J., Faull, R. L., Roos, R. A., & van Roon-Mom, W. M. (2015). Making (anti-) sense out of huntingtin levels in Huntington disease. Molecular Neurodegeneration, 10(1). https://doi.org/10.1186/s13024-015-0018-7

Ranjan, R., Rani, A., Metwally, A., McGee, H. S., & Perkins, D. L. (2015). Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing. Biochemical and Biophysical Research Communications. https://doi.org/10.1016/j.bbrc.2015.12.083

Rand, M. D., Vorojeikina, D., van Wijngaarden, E., Jackson, B. P., Scrimale, T., Zareba, G., Love, T. M., Myers, G. J., & Watson, G. E. (2015). Methods for Individualized Determination of Methylmercury Elimination Rate and De-Methylation Status in Humans Following Fish Consumption. Toxicological Sciences, kfv241. https://doi.org/10.1093/toxsci/kfv241

Shokati, T., Bodenberger, N., Gadpaille, H., Schniedewind, B., Vinks, A. A., Jiang, W., Alloway, R. R., & Christians, U. (2015). Quantification of the Immunosuppressant Tacrolimus on Dried Blood Spots Using LC-MS/MS. Journal of Visualized Experiments, (105). https://doi.org/10.3791/52424

Ruhaak, L. R., Taylor, S. L., Stroble, C., Nguyen, U. T., Parker, E. A., Song, T., Lebrilla, C. B., Rom, W. N., Pass, H., Kim, K., Kelly, K., & Miyamoto, S. (2015). Differential N-Glycosylation Patterns in Lung Adenocarcinoma Tissue. Journal of Proteome Research, 14(11), 4538–4549. https://doi.org/10.1021/acs.jproteome.5b00255

Larsen, F. J., Schiffer, T. A., Ortenblad, N., Zinner, C., Morales-Alamo, D., Willis, S. J., Calbet, J. A., Holmberg, H.-C., & Boushel, R. (2015). High-intensity sprint training inhibits mitochondrial respiration through aconitase inactivation. The FASEB Journal. https://doi.org/10.1096/fj.15-276857

Janocko, L., Althouse, A. D., Brand, R. M., Cranston, R. D., & McGowan, I. (2015). The Molecular Characterization of Intestinal Explant HIV Infection Using Polymerase Chain Reaction-Based Techniques. AIDS Research and Human Retroviruses, 31(10), 981–991. https://doi.org/10.1089/aid.2015.0165

Booth, J. S., Salerno-Goncalves, R., Blanchard, T. G., Patil, S. A., Kader, H. A., Safta, A. M., Morningstar, L. M., Czinn, S. J., Greenwald, B. D., & Sztein, M. B. (2015). Mucosal-Associated Invariant T Cells in the Human Gastric Mucosa and Blood: Role in Helicobacter pylori Infection. Frontiers in Immunology, 6. https://doi.org/10.3389/fimmu.2015.00466

Neve, E. P. A., Köfeler, H., Hendriks, D. F. G., Nordling, Å., Gogvadze, V., Mkrtchian, S., Näslund, E., & Ingelman-Sundberg, M. (2015). Expression and Function of mARC: Roles in Lipogenesis and Metabolic Activation of Ximelagatran. PLOS ONE, 10(9), e0138487. https://doi.org/10.1371/journal.pone.0138487

Frank, P., Andersson, E., Pontén, M., Ekblom, B., Ekblom, M., & Sahlin, K. (2015). Strength training improves muscle aerobic capacity and glucose tolerance in elderly: Strength training in elderly. Scandinavian Journal of Medicine & Science in Sports, n/a-n/a. https://doi.org/10.1111/sms.12537

Nam, S. H., Kim, D., Lee, M.-S., Lee, D., Kwak, T. K., Kang, M., Ryu, J., Kim, H.-J., Song, H. E., Choi, J., Lee, G.-H., Kim, S.-Y., Park, S. H., Kim, D. G., Kwon, N. H., Kim, T. Y., Thiery, J. P., Kim, S., & Lee, J. W. (2015). Noncanonical roles of membranous lysyl-tRNA synthetase in transducing cell-substrate signaling for invasive dissemination of colon cancer spheroids in 3D collagen I gels. Oncotarget, 6(25), 21655–21674. https://doi.org/10.18632/oncotarget.4130

Dragunow, M., Feng, S., Rustenhoven, J., Curtis, M., & Faull, R. (2015). Studying Human Brain Inflammation in Leptomeningeal and Choroid Plexus Explant Cultures. Neurochemical Research. https://doi.org/10.1007/s11064-015-1682-2

Keung, E. Z., Akdemir, K. C., Al Sannaa, G. A., Garnett, J., Lev, D., Torres, K. E., Lazar, A. J., Rai, K., & Chin, L. (2015). Increased H3K9me3 drives dedifferentiated phenotype via KLF6 repression in liposarcoma. Journal of Clinical Investigation, 125(8), 2965–2978. https://doi.org/10.1172/JCI77976

Psilander, N., Frank, P., Flockhart, M., & Sahlin, K. (2015). Adding strength to endurance training does not enhance aerobic capacity in cyclists: Concurrent training mitochondrial biogenesis. Scandinavian Journal of Medicine & Science in Sports, 25(4), e353–e359. https://doi.org/10.1111/sms.12338

Dordevic, A., Pendergast, F., Morgan, H., Villas-Boas, S., Caldow, M., Larsen, A., Sinclair, A., & Cameron-Smith, D. (2015). Postprandial Responses to Lipid and Carbohydrate Ingestion in Repeated Subcutaneous Adipose Tissue Biopsies in Healthy Adults. Nutrients, 7(7), 5347–5361. https://doi.org/10.3390/nu7075224

Kwon, J. J., Nabinger, S. C., Vega, Z., Sahu, S. S., Alluri, R. K., Abdul-Sater, Z., Yu, Z., Gore, J., Nalepa, G., Saxena, R., Korc, M., & Kota, J. (2015). Pathophysiological role of microRNA-29 in pancreatic cancer stroma. Scientific Reports, 5, 11450. https://doi.org/10.1038/srep11450

Sebastian, R., Chau, E., Fillmore, P., Matthews, J., Price, L. A., Sidhaye, V., & Milner, S. M. (2015). Epidermal aquaporin-3 is increased in the cutaneous burn wound. Burns, 41(4), 843–847. https://doi.org/10.1016/j.burns.2014.10.033

Wang, S.-Y., Wang, H.-Y., Wang, T.-E., Wang, H.-H., Chang, W.-H., Chu, C.-H., Lin, S.-C., Yeh, H.-I., & Shih, S.-C. (2015). Delayed healing of gastric ulcer is associated with downregulation of connexin 32 in the gastric mucosa. Advances in Digestive Medicine, 2(2), 67–73. https://doi.org/10.1016/j.aidm.2015.01.004

Andersson, S., Sikora, P., Karlberg, M. L., Winiecka-Krusnell, J., Alm, E., Beser, J., & Arrighi, R. B. G. (2015). It’s a dirty job — A robust method for the purification and de novo genome assembly of Cryptosporidium from clinical material. Journal of Microbiological Methods, 113, 10–12. https://doi.org/10.1016/j.mimet.2015.03.018

Danan-Gotthold, M., Golan-Gerstl, R., Eisenberg, E., Meir, K., Karni, R., & Levanon, E. Y. (2015). Identification of recurrent regulated alternative splicing events across human solid tumors. Nucleic Acids Research, 43(10), 5130–5144. https://doi.org/10.1093/nar/gkv210

Grasso, C. S., Tang, Y., Truffaux, N., Berlow, N. E., Liu, L., Debily, M.-A., Quist, M. J., Davis, L. E., Huang, E. C., Woo, P. J., Ponnuswami, A., Chen, S., Johung, T. B., Sun, W., Kogiso, M., Du, Y., Qi, L., Huang, Y., Hütt-Cabezas, M., … Monje, M. (2015). Functionally defined therapeutic targets in diffuse intrinsic pontine glioma. Nature Medicine, 21(6), 555–559. https://doi.org/10.1038/nm.3855

Choong, E., Guo, J., Persson, A., Virding, S., Johansson, I., Mkrtchian, S., & Ingelman-Sundberg, M. (2015). Developmental Regulation and Induction of Cytochrome P450 2W1, an Enzyme Expressed in Colon Tumors. PLOS ONE, 10(4), e0122820. https://doi.org/10.1371/journal.pone.0122820

Behnia, F., Parets, S. E., Kechichian, T., Yin, H., Dutta, E. H., Saade, G. R., Smith, A. K., & Menon, R. (2015). Fetal DNA methylation of autism spectrum disorders candidate genes: association with spontaneous preterm birth. American Journal of Obstetrics and Gynecology, 212(4), 533.e1-533.e9. https://doi.org/10.1016/j.ajog.2015.02.011

Nasrollahzadeh, D., Malekzadeh, R., Ploner, A., Shakeri, R., Sotoudeh, M., Fahimi, S., Nasseri-Moghaddam, S., Kamangar, F., Abnet, C. C., Winckler, B., Islami, F., Boffetta, P., Brennan, P., Dawsey, S. M., & Ye, W. (2015). Variations of gastric corpus microbiota are associated with early esophageal squamous cell carcinoma and squamous dysplasia. Scientific Reports, 5, 8820. https://doi.org/10.1038/srep08820

Awasthi, N., Hinz, S., Brekken, R. A., Schwarz, M. A., & Schwarz, R. E. (2015). Nintedanib, a triple angiokinase inhibitor, enhances cytotoxic therapy response in pancreatic cancer. Cancer Letters, 358(1), 59–66. https://doi.org/10.1016/j.canlet.2014.12.027

Cleland, T. P., & Vashishth, D. (2015). Bone protein extraction without demineralization using principles from hydroxyapatite chromatography. Analytical Biochemistry, 472, 62–66. https://doi.org/10.1016/j.ab.2014.12.006

Jia, Y., Yu, H., Fernandes, S. M., Wei, Y., Gonzalez-Gil, A., Motari, M. G., Vajn, K., Stevens, W. W., Peters, A. T., Bochner, B. S., Kern, R. C., Schleimer, R. P., & Schnaar, R. L. (2015). Expression of ligands for Siglec-8 and Siglec-9 in human airways and airway cells. Journal of Allergy and Clinical Immunology, 135(3), 799-810.e7. https://doi.org/10.1016/j.jaci.2015.01.004

Sahu, R. (2015). Expression of the platelet-activating factor receptor enhances benzyl isothiocyanate-induced apoptosis in murine and human melanoma cells. Molecular Medicine Reports. https://doi.org/10.3892/mmr.2015.3371

Wang, H., Yang, Y., Li, Y., Bai, B., Wang, X., Tan, H., Liu, T., Beach, T. G., Peng, J., & Wu, Z. (2015). Systematic Optimization of Long Gradient Chromatography Mass Spectrometry for Deep Analysis of Brain Proteome. Journal of Proteome Research, 14(2), 829–838. https://doi.org/10.1021/pr500882h

McGowan, I., Janocko, L., Burneisen, S., Bhat, A., & Richardson-Harman, N. (2015). Variability of cytokine gene expression in intestinal tissue and the impact of normalization with the use of reference genes. Cytokine, 71(1), 81–88. https://doi.org/10.1016/j.cyto.2014.08.010

Quach, K., Grover, S. A., Kenigsberg, S., & Librach, C. L. (2014). A combination of single nucleotide polymorphisms in the 3′untranslated region of HLA-G is associated with preeclampsia. Human Immunology, 75(12), 1163–1170. https://doi.org/10.1016/j.humimm.2014.10.009

Mathewson, M. A., Chambers, H. G., Girard, P. J., Tenenhaus, M., Schwartz, A. K., & Lieber, R. L. (2014). Stiff muscle fibers in calf muscles of patients with cerebral palsy lead to high passive muscle stiffness: CP CALF MUSCLE FIBER STIFFNESS. Journal of Orthopaedic Research, 32(12), 1667–1674. https://doi.org/10.1002/jor.22719

Caceres, S. M., Malcolm, K. C., Taylor-Cousar, J. L., Nichols, D. P., Saavedra, M. T., Bratton, D. L., Moskowitz, S. M., Burns, J. L., & Nick, J. A. (2014). Enhanced In Vitro Formation and Antibiotic Resistance of Nonattached Pseudomonas aeruginosa Aggregates through Incorporation of Neutrophil Products. Antimicrobial Agents and Chemotherapy, 58(11), 6851–6860. https://doi.org/10.1128/AAC.03514-14

Hao, P., Ren, Y., Pasterkamp, G., Moll, F. L., de Kleijn, D. P. V., & Sze, S. K. (2014). Deep proteomic profiling of human carotid atherosclerotic plaques using multidimensional LC-MS/MS. PROTEOMICS - Clinical Applications, 8(7–8), 631–635. https://doi.org/10.1002/prca.201400007

Kim, J.-H., Jeon, M., Song, J.-S., Lee, J.-H., Choi, B.-J., Jung, H.-S., Moon, S. J., DenBesten, P. K., & Kim, S.-O. (2014). Distinctive Genetic Activity Pattern of the Human Dental Pulp between Deciduous and Permanent Teeth. PLoS ONE, 9(7), e102893. https://doi.org/10.1371/journal.pone.0102893

Menon, R., Polettini, J., Syed, T. A., Saade, G. R., & Boldogh, I. (2014). Expression of 8-oxoguanine Glycosylase in Human Fetal Membranes. American Journal of Reproductive Immunology, 72(1), 75–84. https://doi.org/10.1111/aji.12220

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Nagarkar, D. R., Poposki, J. A., Tan, B. K., Comeau, M. R., Peters, A. T., Hulse, K. E., Suh, L. A., Norton, J., Harris, K. E., Grammer, L. C., Chandra, R. K., Conley, D. B., Kern, R. C., Schleimer, R. P., & Kato, A. (2013). Thymic stromal lymphopoietin activity is increased in nasal polyps of patients with chronic rhinosinusitis. Journal of Allergy and Clinical Immunology, 132(3), 593-600.e12. https://doi.org/10.1016/j.jaci.2013.04.005

Kadlubar, S., Penney, R., Lundgreen, A., Yao-Borengassar, A., Koroth-Edavana, V., Williams, S., Wolff, R., & Slattery, M. (2013). Lack of correlation between in silico projection of function and quantitative real-time PCR-determined gene expression levels in colon tissue. Pharmacogenomics and Personalized Medicine, 99. https://doi.org/10.2147/PGPM.S49199

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Hawkins, M. G., Winder, D. M., Ball, S. L. R., Vaughan, K., Sonnex, C., Stanley, M. A., Sterling, J. C., & Goon, P. K. C. (2013). Detection of specific HPV subtypes responsible for the pathogenesis of condylomata acuminata. Virology Journal, 10(1), 137. https://doi.org/10.1186/1743-422X-10-137

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Battaglia, G. M., Zheng, D., Hickner, R. C., & Houmard, J. A. (2012). Effect of exercise training on metabolic flexibility in response to a high-fat diet in obese individuals. AJP: Endocrinology and Metabolism, 303(12), E1440–E1445. https://doi.org/10.1152/ajpendo.00355.2012

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Battaglia, G. M. (2012). Skeletal muscle metabolic flexibility impairments in response to lipid with obesity: effect of exercise training. East Carolina University.

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Marin, S. J., Christensen, R. D., Baer, V. L., Clark, C. J., & McMillin, G. A. (2011). Nicotine and Metabolites in Paired Umbilical Cord Tissue and Meconium Specimens: Therapeutic Drug Monitoring, 33(1), 80–85. https://doi.org/10.1097/FTD.0b013e3182055f14

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Repnik, K., & Potočnik, U. (2010). CTLA4 CT60 Single-Nucleotide Polymorphism Is Associated with Slovenian Inflammatory Bowel Disease Patients and Regulates Expression of CTLA4 Isoforms. DNA and Cell Biology, 29(10), 603–610. https://doi.org/10.1089/dna.2010.1021

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Non-human primates

Goedeke, L., Rotllan, N., Canfrán-Duque, A., Aranda, J. F., Ramírez, C. M., Araldi, E., Lin, C.-S., Anderson, N. N., Wagschal, A., de Cabo, R., Horton, J. D., Lasunción, M. A., Näär, A. M., Suárez, Y., & Fernández-Hernando, C. (2015). MicroRNA-148a regulates LDL receptor and ABCA1 expression to control circulating lipoprotein levels. Nature Medicine, 21(11), 1280–1289. https://doi.org/10.1038/nm.3949

Zhu, Y., Li, M., Sousa, A. M., & Šestan, N. (2014). XSAnno: a framework for building ortholog models in cross-species transcriptome comparisons. BMC Genomics, 15(1), 343. https://doi.org/10.1186/1471-2164-15-343

Ramirez, C. M., Goedeke, L., Rotllan, N., Yoon, J.-H., Cirera-Salinas, D., Mattison, J. A., Suarez, Y., de Cabo, R., Gorospe, M., & Fernandez-Hernando, C. (2013). MicroRNA 33 Regulates Glucose Metabolism. Molecular and Cellular Biology, 33(15), 2891–2902. https://doi.org/10.1128/MCB.00016-13

Nakayama, K. H., Lee, C. C. I., Batchelder, C. A., & Tarantal, A. F. (2013). Tissue Specificity of Decellularized Rhesus Monkey Kidney and Lung Scaffolds. PLoS ONE, 8(5), e64134. https://doi.org/10.1371/journal.pone.0064134

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Pig

Pang, S., Su, F. Y., Green, A., Salim, J., McKittrick, J., & Jasiuk, I. (2021). Comparison of different protocols for demineralization of cortical bone. Scientific Reports, 11(1), 7012. https://doi.org/10.1038/s41598-021-86257-4

Lei, S., Ryu, J., Wen, K., Twitchell, E., Bui, T., Ramesh, A., Weiss, M., Li, G., Samuel, H., Clark-Deener, S., Jiang, X., Lee, K., & Yuan, L. (2016). Increased and prolonged human norovirus infection in RAG2/IL2RG deficient gnotobiotic pigs with severe combined immunodeficiency. Scientific Reports, 6. https://doi.org/10.1038/srep25222

Lei, S., Samuel, H., Twitchell, E., Bui, T., Ramesh, A., Wen, K., Weiss, M., Li, G., Yang, X., Jiang, X., & Yuan, L. (2016). Enterobacter cloacae inhibits human norovirus infectivity in gnotobiotic pigs. Scientific Reports, 6. https://doi.org/10.1038/srep25017

Ablorh, N.-A. D., Dong, X., James, Z. M., Xiong, Q., Zhang, J., Thomas, D. D., & Karim, C. B. (2014). Synthetic Phosphopeptides Enable Quantitation of the Content and Function of the Four Phosphorylation States of Phospholamban in Cardiac Muscle. Journal of Biological Chemistry, 289(42), 29397–29405. https://doi.org/10.1074/jbc.M114.556621

Lassaletta, A. D., Elmadhun, N. Y., Burgess, T. A., Bianchi, C., Sabe, A. A., Robich, M. P., Chu, L. M., & Sellke, F. W. (2014). Microvascular Notch Signaling Is Upregulated in Response to Vascular Endothelial Growth Factor and Chronic Myocardial Ischemia. Circulation Journal, 78(3), 743–751. https://doi.org/10.1253/circj.CJ-13-0685

Lassaletta, A. D., Elmadhun, N. Y., Liu, Y., Feng, J., Burgess, T. A., Karlson, N. W., Laham, R. J., & Sellke, F. W. (2013). Ethanol Promotes Arteriogenesis and Restores Perfusion to Chronically Ischemic Myocardium. Circulation, 128(11_suppl_1), S136–S143. https://doi.org/10.1161/CIRCULATIONAHA.112.000207

Lassaletta, A. D., Chu, L. M., Elmadhun, N. Y., Robich, M. P., Hoffman, Z. G., Kim, D. J., & Sellke, F. W. (2013). Mechanism for reduced pericardial adhesion formation in hypercholesterolemic swine supplemented with alcohol. European Journal of Cardio-Thoracic Surgery, 43(5), 1058–1064. https://doi.org/10.1093/ejcts/ezs488

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Seals & relatives

Moore, C. D., Fahlman, A., Crocker, D. E., Robbins, K. A., & Trumble, S. J. (2015). The degradation of proteins in pinniped skeletal muscle: viability of post-mortem tissue in physiological research. Conservation Physiology, 3(1), cov019–cov019. https://doi.org/10.1093/conphys/cov019

Moore, C. D., Crocker, D. E., Fahlman, A., Moore, M. J., Willoughby, D. S., Robbins, K. A., Kanatous, S. B., & Trumble, S. J. (2014). Ontogenetic changes in skeletal muscle fiber type, fiber diameter and myoglobin concentration in the Northern elephant seal (Mirounga angustirostris). Frontiers in Physiology, 5. https://doi.org/10.3389/fphys.2014.00217

Melero, M., García-Párraga, D., Corpa, J., Ortega, J., Rubio-Guerri, C., Crespo, J., Rivera-Arroyo, B., & Sánchez-Vizcaíno, J. (2014). First molecular detection and characterization of herpesvirus and poxvirus in a Pacific walrus (Odobenus rosmarus divergens). BMC Veterinary Research, 10(1), 968. https://doi.org/10.1186/s12917-014-0308-2

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