Bullet Blender Publications: Protein Extraction

Publications where the Bullet Blender® was used to extract proteins. The proteins may have been used for Western blotting, activity assays, or any one of a wide variety of downstream applications.

Kim, J. M., Park, S. K., Guo, T. J., Kang, J. Y., Ha, J. S., Lee, D. S., … Heo, H. J. (2016). Anti-amnesic effect of Dendropanax morbifera via JNK signaling pathway on cognitive dysfunction in high-fat diet-induced diabetic mice. Behavioural Brain Research, 312, 39–54. https://doi.org/10.1016/j.bbr.2016.06.013
Murray, H. C., Low, V. F., Swanson, M. E. V., Dieriks, B. V., Turner, C., Faull, R. L. M., & Curtis, M. A. (2016). Distribution of PSA-NCAM in normal, Alzheimer’s and Parkinson’s disease human brain. Neuroscience, 330, 359–375. https://doi.org/10.1016/j.neuroscience.2016.06.003
Krutzke, L., Prill, J. M., Engler, T., Schmidt, C. Q., Xu, Z., Byrnes, A. P., … Kreppel, F. (2016). Substitution of blood coagulation factor X-binding to Ad5 by position-specific PEGylation: Preventing vector clearance and preserving infectivity. Journal of Controlled Release, 235, 379–392. https://doi.org/10.1016/j.jconrel.2016.06.022
Alqaisi, K. M., Lamare, M. D., Grattan, D. R., Damsteegt, E. L., Schneider, W. J., & Lokman, P. M. (2016). A comparative study of vitellogenesis in Echinodermata: Lessons from the sea star. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 198, 72–86. https://doi.org/10.1016/j.cbpa.2016.04.013
Rocha, B. S., Lundberg, J. O., Radi, R., & Laranjinha, J. (2016). Role of nitrite, urate and pepsin in the gastroprotective effects of saliva. Redox Biology, 8, 407–414. https://doi.org/10.1016/j.redox.2016.04.002
Ohana, D., Dalebout, H., Marissen, R. J., Wulff, T., Bergquist, J., Deelder, A. M., & Palmblad, M. (2016). Identification of meat products by shotgun spectral matching. Food Chemistry, 203, 28–34. https://doi.org/10.1016/j.foodchem.2016.01.138
Shreeram, S., Ramesh, S., Puthan, J. K., Balakrishnan, G., Subramanian, R., Reddy, M. T., & Pereira, S. L. (2016). Age associated decline in the conversion of leucine to β-Hydroxy-β-Methylbutyrate in rats. Experimental Gerontology, 80, 6–11. https://doi.org/10.1016/j.exger.2016.03.021
Gunderson, M. P., Pickett, M. A., Martin, J. T., Hulse, E. J., Smith, S. S., Smith, L. A., … Guillette Jr., L. J. (2016). Variations in hepatic biomarkers in American alligators (Alligator mississippiensis) from three sites in Florida, USA. Chemosphere, 155, 180–187. https://doi.org/10.1016/j.chemosphere.2016.04.018
Bonney, E. A., Krebs, K., Saade, G., Kechichian, T., Trivedi, J., Huaizhi, Y., & Menon, R. (2016). Differential senescence in feto-maternal tissues during mouse pregnancy. Placenta, 43, 26–34. https://doi.org/10.1016/j.placenta.2016.04.018
Orgil, O., Mor, H., Matityahu, A., & Onn, I. (2016). Identification of a region in the coiled-coil domain of Smc3 that is essential for cohesin activity. Nucleic Acids Research, gkw539. https://doi.org/10.1093/nar/gkw539
David, C. N., Frias, E. S., Szu, J. I., Vieira, P. A., Hubbard, J. A., Lovelace, J., … Wilson, E. H. (2016). GLT-1-Dependent Disruption of CNS Glutamate Homeostasis and Neuronal Function by the Protozoan Parasite Toxoplasma gondii. PLOS Pathog, 12(6), e1005643. https://doi.org/10.1371/journal.ppat.1005643
Shwartz, M., Matityahu, A., & Onn, I. (2016). Identification of Functional Domains in the Cohesin Loader Subunit Scc4 by a Random Insertion/Dominant Negative Screen. G3: Genes|Genomes|Genetics, g3.116.031674. https://doi.org/10.1534/g3.116.031674
Zheng, Y., Xie, J., Huang, X., Dong, J., Park, M. S., & Chan, W. K. (2016). Binding studies using Pichia pastoris expressed human aryl hydrocarbon receptor and aryl hydrocarbon receptor nuclear translocator proteins. Protein Expression and Purification, 122, 72–81. https://doi.org/10.1016/j.pep.2016.02.011
Chatzopoulou, A., Heijmans, J. P. M., Burgerhout, E., Oskam, N., Spaink, H. P., Meijer, A. H., & Schaaf, M. J. M. (2016). Glucocorticoid-induced attenuation of the inflammatory response in zebrafish. Endocrinology, en20152050. https://doi.org/10.1210/en.2015-2050
Vadnie, C. A., Ayers-Ringler, J., Oliveros, A., Abulseoud, O. A., Choi, S., Hitschfeld, M. J., & Choi, D.-S. (2016). Antipsychotic-like effects of a neurotensin receptor type 1 agonist. Behavioural Brain Research, 305, 8–17. https://doi.org/10.1016/j.bbr.2016.02.019
Hoover, C. E., Davenport, K. A., Henderson, D. M., Pulscher, L. A., Mathiason, C. K., Zabel, M. D., & Hoover, E. A. (2016). Detection and Quantification of CWD Prions in Fixed Paraffin Embedded Tissues by Real-Time Quaking-Induced Conversion. Scientific Reports, 6. https://doi.org/10.1038/srep25098
Wang, Y., & Pfeiffer, J. K. (2016). Emergence of a Large-Plaque Variant in Mice Infected with Coxsackievirus B3. MBio, 7(2), e00119-16. https://doi.org/10.1128/mBio.00119-16
Coughlan, M. T., Nguyen, T.-V., Penfold, S. A., Higgins, G. C., Thallas-Bonke, V., Tan, S. M., … Forbes, J. M. (2016). Mapping time-course mitochondrial adaptations in the kidney in experimental diabetes. Clinical Science, 130(9), 711–720. https://doi.org/10.1042/CS20150838
Johns, M., Esmaeili Mohsen Abadi, S., Malik, N., Lee, J., Neumann, W. L., Rausaria, S., … Kwon, G. (2016). Oral administration of SR-110, a peroxynitrite decomposing catalyst, enhances glucose homeostasis, insulin signaling, and islet architecture in B6D2F1 mice fed a high fat diet. Archives of Biochemistry and Biophysics, 596, 126–137. https://doi.org/10.1016/j.abb.2016.03.002
Thapa, H. R., Naik, M. T., Okada, S., Takada, K., Molnár, I., Xu, Y., & Devarenne, T. P. (2016). A squalene synthase-like enzyme initiates production of tetraterpenoid hydrocarbons in Botryococcus braunii Race L. Nature Communications, 7, 11198. https://doi.org/10.1038/ncomms11198
Ayers-Ringler, J. R., Oliveros, A., Qiu, Y., Lindberg, D. M., Hinton, D. J., Moore, R. M., … Choi, D.-S. (2016). Label-Free Proteomic Analysis of Protein Changes in the Striatum during Chronic Ethanol Use and Early Withdrawal. Frontiers in Behavioral Neuroscience, 10. https://doi.org/10.3389/fnbeh.2016.00046
Zhang, F., Hartnett, S., Sample, A., Schnack, S., & Li, Y. (2016). High fat diet induced alterations of atrial electrical activities in mice. American Journal of Cardiovascular Disease, 6(1), 1–9. Retrieved from http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4788723/
Rosner, J. Y., Gupta, M., McGill, M., Xue, X., Chatterjee, P. K., Yoshida-Hay, M., … Metz, C. N. (2016). Magnesium deficiency during pregnancy in mice impairs placental size and function. Placenta, 39, 87–93. https://doi.org/10.1016/j.placenta.2016.01.009
Bosch, M., Fajardo, A., Alcalá-Vida, R., Fernández-Vidal, A., Tebar, F., Enrich, C., … Pol, A. (2016). Hepatic Primary and Secondary Cholesterol Deposition and Damage in Niemann-Pick Disease. The American Journal of Pathology, 186(3), 517–523. https://doi.org/10.1016/j.ajpath.2015.12.002
Bennike, T. B., Kastaniegaard, K., Padurariu, S., Gaihede, M., Birkelund, S., Andersen, V., & Stensballe, A. (2016). Proteome stability analysis of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human colon mucosal biopsies. Data in Brief, 6, 942–947. https://doi.org/10.1016/j.dib.2016.01.061
Diamos, A. G., Rosenthal, S. H., & Mason, H. S. (2016). 5′ and 3′ Untranslated Regions Strongly Enhance Performance of Geminiviral Replicons in Nicotiana benthamiana Leaves. Frontiers in Plant Science, 7. https://doi.org/10.3389/fpls.2016.00200
Otwell, A. E., Callister, S. J., Zink, E. M., Smith, R. D., & Richardson, R. E. (2016). Comparative Proteomic Analysis of Desulfotomaculum reducens MI-1: Insights into the Metabolic Versatility of a Gram-Positive Sulfate- and Metal-Reducing Bacterium. Frontiers in Microbiology, 7. https://doi.org/10.3389/fmicb.2016.00191
Viader, A., Ogasawara, D., Joslyn, C. M., Sanchez-Alavez, M., Mori, S., Nguyen, W., … Cravatt, B. F. (2016). A chemical proteomic atlas of brain serine hydrolases identifies cell type-specific pathways regulating neuroinflammation. ELife, 5, e12345. https://doi.org/10.7554/eLife.12345
Clark, D. J., Mei, Y., Sun, S., Zhang, H., Yang, A. J., & Mao, L. (2016). Glycoproteomic Approach Identifies KRAS as a Positive Regulator of CREG1 in Non-small Cell Lung Cancer Cells. Theranostics, 6(1), 65–77. https://doi.org/10.7150/thno.12350
Bennike, T. B., Kastaniegaard, K., Padurariu, S., Gaihede, M., Birkelund, S., Andersen, V., & Stensballe, A. (2016). Comparing the proteome of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human tissue samples. EuPA Open Proteomics, 10, 9–18. https://doi.org/10.1016/j.euprot.2015.10.001
Lee, M., Kim, D. W., Yoon, H., So, D., Khalmuratova, R., Rhee, C.-S., … Shin, H.-W. (2016). Sirtuin 1 attenuates nasal polypogenesis by suppressing epithelial-to-mesenchymal transition. Journal of Allergy and Clinical Immunology, 137(1), 87–98.e7. https://doi.org/10.1016/j.jaci.2015.07.026
Park, W. C., Kim, H.-R., Kang, D. B., Ryu, J.-S., Choi, K.-H., Lee, G.-O., … Park, D.-S. (2016). Comparative expression patterns and diagnostic efficacies of SR splicing factors and HNRNPA1 in gastric and colorectal cancer. BMC Cancer, 16, 358. https://doi.org/10.1186/s12885-016-2387-x
Pomraning, K. R., Kim, Y.-M., Nicora, C. D., Chu, R. K., Bredeweg, E. L., Purvine, S. O., … Baker, S. E. (2016). Multi-omics analysis reveals regulators of the response to nitrogen limitation in Yarrowia lipolytica. BMC Genomics, 17, 138. https://doi.org/10.1186/s12864-016-2471-2
Park, S. J., Lee, H. W., Kim, H.-R., Kang, C., & Kim, H. M. (2016). A carboxylesterase-selective ratiometric fluorescent two-photon probe and its application to hepatocytes and liver tissues. Chem. Sci., 7(6), 3703–3709. https://doi.org/10.1039/C5SC05001D
Kim, J., Shim, J., Lee, S., Cho, W.-H., Hong, E., Lee, J. H., … Lee, K. W. (2016). Rg3-enriched ginseng extract ameliorates scopolamine-induced learning deficits in mice. BMC Complementary and Alternative Medicine, 16, 66. https://doi.org/10.1186/s12906-016-1050-z
Gallart-Palau, X., Lee, B. S. T., Adav, S. S., Qian, J., Serra, A., Park, J. E., … Sze, S. K. (2016). Gender differences in white matter pathology and mitochondrial dysfunction in Alzheimer’s disease with cerebrovascular disease. Molecular Brain, 9, 27. https://doi.org/10.1186/s13041-016-0205-7
Tristán-Noguero, A., Díez, H., Jou, C., Pineda, M., Ormazábal, A., Sánchez, A., … Garcia-Cazorla, À. (2015). Study of a fetal brain affected by a severe form of tyrosine hydroxylase deficiency, a rare cause of early parkinsonism. Metabolic Brain Disease. https://doi.org/10.1007/s11011-015-9780-z
Semple, B. D., Noble-Haeusslein, L. J., Gooyit, M., Tercovich, K. G., Peng, Z., Nguyen, T. T., … Trivedi, A. (2015). Early Gelatinase Activity Is Not a Determinant of Long-Term Recovery after Traumatic Brain Injury in the Immature Mouse. PLOS ONE, 10(11), e0143386. https://doi.org/10.1371/journal.pone.0143386
Lee, D., Ahn, C., An, B.-S., & Jeung, E.-B. (2015). Induction of the Estrogenic Marker Calbindn-D9k by Octamethylcyclotetrasiloxane. International Journal of Environmental Research and Public Health, 12(11), 14610–14625. https://doi.org/10.3390/ijerph121114610
Hernandez-Anzaldo, S., Berry, E., Brglez, V., Leung, D., Yun, T. J., Lee, J. S., … Fernandez-Patron, C. (2015). Identification of a Novel Heart-Liver Axis: Matrix Metalloproteinase-2 Negatively Regulates Cardiac Secreted Phospholipase A2 to Modulate Lipid Metabolism and Inflammation in the Liver. Journal of the American Heart Association, 4(11), e002553–e002553. https://doi.org/10.1161/JAHA.115.002553
Pappas, C. T., Mayfield, R. M., Henderson, C., Jamilpour, N., Cover, C., Hernandez, Z., … Gregorio, C. C. (2015). Knockout of Lmod2 results in shorter thin filaments followed by dilated cardiomyopathy and juvenile lethality. Proceedings of the National Academy of Sciences, 201508273. https://doi.org/10.1073/pnas.1508273112
Albury-Warren, T. M., Pandey, V., Spinel, L. P., Masternak, M., & Altomare, D. A. (2015). Prediabetes linked to excess glucagon in transgenic mice with pancreatic active AKT1. Journal of Endocrinology, JOE-15-0288. https://doi.org/10.1530/JOE-15-0288
Papke, C. L., Tsunezumi, J., Ringuette, L.-J., Nagaoka, H., Terajima, M., Yamashiro, Y., … Yanagisawa, H. (2015). Loss of fibulin-4 disrupts collagen synthesis and maturation: implications for pathology resulting from EFEMP2 mutations. Human Molecular Genetics, 24(20), 5867–5879. https://doi.org/10.1093/hmg/ddv308
Byun, S., Shin, S. H., Lee, E., Lee, J., Lee, S.-Y., Farrand, L., … Dong, Z. (2015). The retinoic acid derivative, ABPN, inhibits pancreatic cancer through induction of Nrdp1. Carcinogenesis, bgv148. https://doi.org/10.1093/carcin/bgv148
Larsen, F. J., Schiffer, T. A., Ortenblad, N., Zinner, C., Morales-Alamo, D., Willis, S. J., … Boushel, R. (2015). High-intensity sprint training inhibits mitochondrial respiration through aconitase inactivation. The FASEB Journal. https://doi.org/10.1096/fj.15-276857
Neve, E. P. A., Köfeler, H., Hendriks, D. F. G., Nordling, Å., Gogvadze, V., Mkrtchian, S., … Ingelman-Sundberg, M. (2015). Expression and Function of mARC: Roles in Lipogenesis and Metabolic Activation of Ximelagatran. PLOS ONE, 10(9), e0138487. https://doi.org/10.1371/journal.pone.0138487
Meyer, R. E., Chuong, H. H., Hild, M., Hansen, C. L., Kinter, M., & Dawson, D. S. (2015). Ipl1/Aurora-B is necessary for kinetochore restructuring in meiosis I in Saccharomyces cerevisiae. Molecular Biology of the Cell, 26(17), 2986–3000. https://doi.org/10.1091/mbc.E15-01-0032
Aylward, F. O., Khadempour, L., Tremmel, D. M., McDonald, B. R., Nicora, C. D., Wu, S., … Currie, C. R. (2015). Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants. PLOS ONE, 10(8), e0134752. https://doi.org/10.1371/journal.pone.0134752
Jallouk, A. P., Palekar, R. U., Marsh, J. N., Pan, H., Pham, C. T. N., Schlesinger, P. H., & Wickline, S. A. (2015). Delivery of a Protease-Activated Cytolytic Peptide Prodrug by Perfluorocarbon Nanoparticles. Bioconjugate Chemistry, 26(8), 1640–1650. https://doi.org/10.1021/acs.bioconjchem.5b00246
Jo, S., Ryu, J., Kim, H., Kim, M., Ryu, M. H., Kim, H., & Cho, S.-I. (2015). Anti-inflammatory effects of Sanguisorbae Radix on contact dermatitis induced by dinitrofluorobenzene in mice. Chinese Journal of Integrative Medicine. https://doi.org/10.1007/s11655-015-2148-8
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